Table 5 Comparison of the peach genome to other published plant genomes
Genome release [Reference] | Coverage | Assembled scaffold sequence Mb | Mapped sequences Mb (%) | N50 | L50Â Mb | N50 | L50Â Mb | Contig N50 | Contig L50 kb | Sequencing methods |
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Scaffold WGSa | Scaffold Chrb | Â | Â | Â | ||
Peach (Prunus persica) v2.0 [20] | 8.47x | 227.4 | 225.7 (99.2) | 10 | 7.3 | 4 | 27.4 | 250 | 255.4 | Sanger (WGS) |
Apple (Malus x domestica) [10] | 16.9x | 598.3 | 528.3 (88.3) | 80 | 2 | -- | -- | 16171 | 13.4 | Sanger, 454 (WGS) |
Arabidopsis thaliana c [7] | -- | 119.7 | 119.7 (100) | -- | -- | 3 | 23.5 | -- | -- | Sanger, (BAC by BAC) |
Rice (Oryza sativa)d [5] | -- | 382.2 | 382.2 (100) | -- | -- | 6 | 30.8 | -- | -- | Sanger, (BAC by BAC) |
Soybean (Glycine max)e v2.0 [88] | 8.04x | 955.4f | 932.5 (97.6) | -- | -- | 10 | 48.6f | 1548f | 182.8f | Sanger (WGS) |
Poplar (Populus trichocarpa)e v3.0 [3] | 9.44xf | 423f | 388 (91.7) | -- | -- | 8f | 19.5f | 206f | 552.8f | Sanger (WGS) |
Grape (Vitis vinifera)e [4] | 8.4x | 467.5 | 290.2 (62.1) | -- | 2.1 | 14 | 13.9 | 2012 | 66.4 | Sanger (WGS) |
Papaya (Carica papaya)e [89] | <3x | 271.7 | 235 (86.5) | -- | -- | 74 | 1.3 | 7109 | 10.6 | Sanger (WGS) |
Brachypodium distachyon v3.1 [90] | 9.4x | 271.9 | 271.1 (99.8) | -- | -- | 3 | 59.3 | -- | 22000f | Sanger (WGS) |
Sorghum bicolor e v3.1 [91] | 8.5x | 697.6 | 625.6 (89.7) | -- | -- | 6 | 62.4 | -- | 1200f | Sanger (WGS) |
Selaginella moellendorffii [92] | 7x | 212.6 | -- (--) | 38 | 1.7 | -- | -- | 515 | 119.8 | Sanger (WGS) |
Physcomitrella patens e, v3.3 [93] | 8.92x | 466.7 | -- (--) | 86 | 1.7 | 12f | 17.4f | 312f | 464.9f | Sanger (WGS) |
Tomato (Solanum lycopersicon) [94] | 25x | 781.3 | 759.9 (97.3) | 52 | 4.5 | 6 | 64.8 | 3641 | 55.7 | Sanger, 454, Solid, Illumina (WGS) |
Banana (Musa paradisiaca) [95] | 20.5x | 472.2 | 331.8 (70.3) | 65 | 1.3 | 8 | 28.6 | 2113 | 43.1 | Sanger, 454 (WGS) |
Citrus (Citrus x clementina) [96] | 6.97x | 309.9 | 288.6 (93.1) | -- | 6.8 | -- | 31.4 | -- | 115.9 | Sanger (WGS) |
Watermelon (Citrullus lanatum) [97] | 108.64x | 353.5 | 330 (93.4) | 42 | 2.4 | -- | -- | 3315 | 26.4 | Illumina (WGS) |
Amborella trichopoda [98] | 30x | 706 | -- | 50 | 4.9 | -- | -- | 6448 | 29.4 | Sanger, 454, Illumina (WGS) |
Medicago truncatula [99] | -- | 328.9 | 297.1 (90.3) | 53 | 1.27 | 4 | 38.9 | -- | -- | Sanger, 454, Illumina (WGS, BAC by BAC) |
Melon (Cucumis melo) [100] | 13.52x | 361.4 | 316.3 (87.5) | 26 | 4.68 | 6g | 17.7g | -- | 18.2 | Sanger, 454 (WGS) |
Coffee (Coffea canephora) [101] | 30x | 568.6 | 364.1 (64.0) | 108 | 1.3 | 5g | 32g | 2290 | 51.1 | Sanger, 454, Illumina (WGS) |
Cotton (Gossipium raimondii) [102] | 103.6x | 775.2 | 567.2 (73.2) | 95 | 2.3 | -- | -- | 4918 | 44.9 | Illumina (WGS) |
Pineapple (Ananas comosus) [39] | 410x | 381.9 | 315.8 (82.7) | -- | 0.64 | 13g | 11.8 | -- | 126.5 | PACbio, Illumina, 454, Moleculo, (WGS) |