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Table 4 Summary of candidate genes associated with fatty acid biosynthesis in significant association regions

From: Genome-wide association mapping and Identification of candidate genes for fatty acid composition in Brassica napus L. using SNP markers

Chromosome

Gene ID of B. napus

Physical position (Mb)

AGI No.

Description

A2

BnaA02g13270D

7.29

AT1G77590

long chain acyl-CoA synthetase 9 (LACS9)

 

BnaA02g13310D

7.31

AT1G67730

beta-ketoacyl reductase 1 (KCR1)

 

BnaA02g17050D

10.25

AT1G74960

fatty acid biosynthesis 1 (FAB1)

 

BnaA02g17090D

10.26

AT1G75020

lysophosphatidyl acyltransferase 4 (LPAT4)

 

BnaA02g17170D

10.29

AT1G75020

lysophosphatidyl acyltransferase 4 (LPAT4)

A8

BnaA08g09510D

9.09

AT4G20840

FAD-binding Berberine family protein

 

BnaA08g11130D

10.19

AT4G34520

3-ketoacyl-CoA synthase 18 (KCS18)

 

BnaA08g11140D

10.19

AT4G34510

3-ketoacyl-CoA synthase 17 (KCS17)

 

BnaA08g11440D

10.39

AT4G33790

ECERIFERUM 4 (CER4)

 

BnaA08g11650D

10.51

AT4G34030

3-methylcrotonyl-CoA carboxylase (MCCB)

 

BnaA08g11810D

10.60

AT4G33355

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

 

BnaA08g12370D

11.04

AT4G31750

HOPW1-1-interacting 2 (WIN2)

A9

BnaA09g05410D

2.64

AT5G23260

TRANSPARENT TESTA16 (TT16)

 

BnaA09g06170D

3.03

AT2G25710

holocarboxylase synthase 1 (HCS1)

 

BnaA09g07080D

3.46

AT5G65110

acyl-CoA oxidase 2 (ACX2)

C1

BnaC01g24110D

18.59

AT5G23050

acyl-activating enzyme 17 (AAE17)

 

BnaC01g25570D

21.58

AT3G48080

alpha/beta-Hydrolases superfamily protein

 

BnaC01g25590D

21.62

AT3G48080

alpha/beta-Hydrolases superfamily protein

 

BnaC01g25950D

22.29

AT3G49200

O-acyltransferase (WSD1-like) family protein

 

BnaC01g25960D

22.31

AT3G49210

O-acyltransferase (WSD1-like) family protein

 

BnaC01g26460D

23.35

AT1G74960

fatty acid biosynthesis 1 (FAB1)

 

BnaC01g26550D

23.45

AT5G27630

acyl-CoA binding protein 5 (ACBP5)

 

BnaC01g26600D

23.60

AT3G50270

HXXXD-type acyl-transferase family protein

C3

BnaC03g62710D

51.93

AT4G18550

alpha/beta-Hydrolases superfamily protein

 

BnaC03g63920D

53.41

AT4G20840

FAD-binding Berberine family protein

 

BnaC03g63930D

53.42

AT4G20860

FAD-binding Berberine family protein

 

BnaC03g64130D

53.56

AT4G21534

Diacylglycerol kinase family protein

 

BnaC03g65080D

54.57

AT4G22666

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

 

BnaC03g65980D

55.68

AT4G34520

3-ketoacyl-CoA synthase 18 (KCS18)

 

BnaC03g66040D

55.81

AT4G34510

3-ketoacyl-CoA synthase 17 (KCS17)

 

BnaC03g66380D

56.21

AT4G33790

ECERIFERUM 4 (CER4)

 

BnaC03g67410D

57.10

AT4G31750

HOPW1-1-interacting 2 (WIN2)