Skip to main content

Table 4 Summary of candidate genes associated with fatty acid biosynthesis in significant association regions

From: Genome-wide association mapping and Identification of candidate genes for fatty acid composition in Brassica napus L. using SNP markers

Chromosome Gene ID of B. napus Physical position (Mb) AGI No. Description
A2 BnaA02g13270D 7.29 AT1G77590 long chain acyl-CoA synthetase 9 (LACS9)
  BnaA02g13310D 7.31 AT1G67730 beta-ketoacyl reductase 1 (KCR1)
  BnaA02g17050D 10.25 AT1G74960 fatty acid biosynthesis 1 (FAB1)
  BnaA02g17090D 10.26 AT1G75020 lysophosphatidyl acyltransferase 4 (LPAT4)
  BnaA02g17170D 10.29 AT1G75020 lysophosphatidyl acyltransferase 4 (LPAT4)
A8 BnaA08g09510D 9.09 AT4G20840 FAD-binding Berberine family protein
  BnaA08g11130D 10.19 AT4G34520 3-ketoacyl-CoA synthase 18 (KCS18)
  BnaA08g11140D 10.19 AT4G34510 3-ketoacyl-CoA synthase 17 (KCS17)
  BnaA08g11440D 10.39 AT4G33790 ECERIFERUM 4 (CER4)
  BnaA08g11650D 10.51 AT4G34030 3-methylcrotonyl-CoA carboxylase (MCCB)
  BnaA08g11810D 10.60 AT4G33355 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
  BnaA08g12370D 11.04 AT4G31750 HOPW1-1-interacting 2 (WIN2)
A9 BnaA09g05410D 2.64 AT5G23260 TRANSPARENT TESTA16 (TT16)
  BnaA09g06170D 3.03 AT2G25710 holocarboxylase synthase 1 (HCS1)
  BnaA09g07080D 3.46 AT5G65110 acyl-CoA oxidase 2 (ACX2)
C1 BnaC01g24110D 18.59 AT5G23050 acyl-activating enzyme 17 (AAE17)
  BnaC01g25570D 21.58 AT3G48080 alpha/beta-Hydrolases superfamily protein
  BnaC01g25590D 21.62 AT3G48080 alpha/beta-Hydrolases superfamily protein
  BnaC01g25950D 22.29 AT3G49200 O-acyltransferase (WSD1-like) family protein
  BnaC01g25960D 22.31 AT3G49210 O-acyltransferase (WSD1-like) family protein
  BnaC01g26460D 23.35 AT1G74960 fatty acid biosynthesis 1 (FAB1)
  BnaC01g26550D 23.45 AT5G27630 acyl-CoA binding protein 5 (ACBP5)
  BnaC01g26600D 23.60 AT3G50270 HXXXD-type acyl-transferase family protein
C3 BnaC03g62710D 51.93 AT4G18550 alpha/beta-Hydrolases superfamily protein
  BnaC03g63920D 53.41 AT4G20840 FAD-binding Berberine family protein
  BnaC03g63930D 53.42 AT4G20860 FAD-binding Berberine family protein
  BnaC03g64130D 53.56 AT4G21534 Diacylglycerol kinase family protein
  BnaC03g65080D 54.57 AT4G22666 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
  BnaC03g65980D 55.68 AT4G34520 3-ketoacyl-CoA synthase 18 (KCS18)
  BnaC03g66040D 55.81 AT4G34510 3-ketoacyl-CoA synthase 17 (KCS17)
  BnaC03g66380D 56.21 AT4G33790 ECERIFERUM 4 (CER4)
  BnaC03g67410D 57.10 AT4G31750 HOPW1-1-interacting 2 (WIN2)