BMC Genomics

Table 3 Descriptive analysis of the runs of homozygosity per breed and including all genotyped animals

From: Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

		Breed
		AL	BA	BC	CA	LA	NU	RA	SA	TO
NSEG	Mean	15.6	23.6	31.5	8.1	19.4	31.2	5.2	16.7	24.1
	SD	8.5	7.2	7.9	2.9	7.1	7.2	3.4	8.4	9.1
	Min	0	9	0	4	6	13	0	0	2
	Max	44	45	59	16	38	46	19	43	40
KB	Mean	74,510	113,200	137,900	49,630	93,710	138,100	22,800	79,720	111,700
	SD	47,837	35,307	39,826	22,197	43,500	45,131	22,370	46,714	43,759
	Min	0	47,010	0	12,780	21,670	49,430	0	0	5731
	Max	307,100	192,100	287,600	98,230	231,900	332,000	160,400	242,500	179,200
KB_AVER	Mean	4503	4824	4298	5967	4719	4375	3859	4518	4570
	SD	1187	740	677	1423	767	609	1933	1052	686
	Min	0	3618	0	2766	3096	3327	0	0	2866
	Max	7869	6647	5338	8595	6872	7217	12,130	8916	6108
NSNP	Mean	100.2	100.2	91.9	126.7	100.8	92.9	91.4	100.2	97.2
	SD	62.5	66.2	52.8	87.3	63.6	53.6	72.3	63.2	61.1
	Min	42	46	45	47	48	45	47	43	47
	Max	800	655	614	640	669	691	701	826	573
Density	Mean	47.5	47.5	47.3	47.7	47.5	47.3	47.6	47.4	47.3
	SD	2.1	2.3	2.3	1.9	2.1	2.3	1.9	2.0	2.2
	Min	29.8	23.5	21.5	35.6	26.8	27.9	40.5	28.5	26.7
	Max	50	50	50	50	49	50	49	50	50
PHOM	Mean	0.96	0.99	0.96	0.99	0.96	0.96	0.98	0.96	0.96
PHOM	SD	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01

NSEG average number of segments for the individual declared homozygous, KB average of total number of kb contained within homozygous segments, KB _AVER average size of homozygous segments, NSNP average number of SNPs in run, PHOM proportion of sites homozygous, AL Alpine, BA Australian Boer, BC Canadian Boer, CA Cashmere, LA LaMancha, NU Nubian, RA Rangeland, SA Saanen, TO Toggenburg, Min minimum, Max maximum, SD standard deviation

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ISSN: 1471-2164

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