Table 7 Genomic regions under differential selection for all goat breed comparisons (FST1) and list of the genes located in the region of the 10 most significant SNPs (based on smoothed FST values)
Scenario | Breed | Chr | Size (Mb) | Ngenes | Peak SNP | Genes present in the region of the 10 peak SNPs |
|---|---|---|---|---|---|---|
FST1 | AL | 10 | 43.4 | 401 | snp25170-scaffold259-4130319 | CYP19A1, LOC102172726, TNFAIP8L3, AP4E1 |
FST1 | BA | 13 | 19.2 | 137 | snp49043-scaffold7-3464730 | ITGA8, FAM188A |
FST1 | BC | 3 | 12.9 | 133 | snp46905-scaffold654-1593334 | LOC102168226 |
FST1 | BC | 20 | 21.4 | 63 | snp34011-scaffold40-2937263 | CDH12 |
FST1 | BC | 24 | 2.6 | 7 | snp836-scaffold1022-339033 | No genes in the peak region |
FST1 | LA | 7 | 23.3 | 353 | snp23253-scaffold2322-180232 | KCTD16 |
FST1 | NU | 6 | 11.4 | 53 | snp16822-scaffold1760-904920 | FAM13A, HERC3, NAP1L5 |
FST1 | NU | 11 | 6.2 | 37 | snp9748-scaffold135-1883590 | KCNG3, MTA3, LOC102176890, OXER1, HAAO, TRNAI-UAU |
FST1 | NU | 22 | 9.6 | 47 | snp15314-scaffold163-1176183 | FHIT |
FST1 | RL | 6 | 3.6 | 7 | snp11723-scaffold1432-75297 | LOC102184415, TRNAC-GCA |
FST1 | SA | 6 | 13.2 | 86 | snp58130-scaffold94-7008249 | CEP135, KIAA1211, AASDH, PPAT, LOC102176867, PAICS, SRP72, LOC102177146, ARL9, THEGL, LOC102178156, LOC102178436, HOPX |