Table 8 Genomic regions under differential selection based on breeds grouped per selection purpose and list of the genes located in the region of the 10 most significant SNPs (based on smoothed FST values)
Scenario | Group | Chr | Size (Mb) | Ngenes | Peak SNP | Genes present in the region of the 10 peak SNPs |
|---|---|---|---|---|---|---|
FST2 | Meat | 3 | 13.7 | 149 | snp25334-scaffold261-808539 | LOC100861222, LOC102185621, AMPD2, GNAT2, GNAI3, GPR61, AMIGO1, LOC102191753, ATXN7L2, SYPL2, LOC102169721, PSMA5, SORT1, MYBPHL, PSRC1, CELSR2 |
FST2 | Meat | 13 | 10.2 | 66 | snp48991-scaffold7-1097529 | MRC1, SLC39A12, CACNB2 |
FST2 | Meat | 20 | 9.6 | 17 | snp57443-scaffold916-509375 | No genes |
FST2 | Meat | 25 | 1.4 | 3 | snp9539-scaffold1343-1758601 | TRNAC-GCA |
FST3 | DP | 6 | 13.3 | 60 | snp16815-scaffold1760-560278 | GPRIN3, TIGD2, FAM13A, HERC3 |
FST3 | DP | 22 | 10.0 | 48 | snp15310-scaffold163-1010990 | FHIT |
FST3 | Meat | 3 | 7.7 | 96 | snp46886-scaffold654-758578 | VAV3 |
FST3 | Meat | 6 | 11.3 | 52 | snp2176-scaffold1066-801755 | No genes |
FST3 | Meat | 20 | 5.4 | 12 | snp33977-scaffold40-1436358 | LOC102188712, TRNAC-GCA, LOC102188978 |