Table 9 Genomic regions under differential selection based on hapFLK methodology and list of the genes located in the region of the 10 most significant SNPs
Scenario | Breed | Chr | Size (Mb) | Ngenes | Peak SNP | Genes present in the region of the 10 peak SNPs |
|---|---|---|---|---|---|---|
hapFLK | All breeds | 4 | 0.5 | 0 | snp5822-scaffold1205-140455 | No genes |
hapFLK | All breeds | 6 | 0.0 | 0 | snp2181-scaffold1066-1048134 | No genes |
hapFLK | All breeds | 7 | 8.6 | 255 | snp12700-scaffold1488-1106620 | PBX4, CILP2, NDUFA13, LOC102187668, GATAD2A, MAU2, SUGP1, TM6SF2, NCAN, NR2C2AP, RFXANK, MEF2BNB, MEF2B, TMEM161A, SLC25A42 |
hapFLK | All breeds | 7 | 8.9 | 92 | snp57917-scaffold938-380104 | LOC102169003 |
hapFLK | All breeds | 13 | 0.0 | 0 | snp7739-scaffold1278-1991262 | No genes |
hapFLK | All breeds | 19 | 0.3 | 18 | snp3321-scaffold1101-888266 | UBE2O, SPHK1, LOC102185500, LOC102185776, PRPSAP1, QRICH2, UBALD2, LOC102186516, RNF157, LOC102186798, FOXJ1, EXOC7, ZACN, GALR2, SRP68, EVPL, CDK3, TEN1 |
hapFLK | All breeds | 23 | 0.8 | 2 | snp23628-scaffold2385-317663 | DST, COL21A1 |