Cell line/Tumor type | Epigenetic marks | Key transcription factora | Number of SNPs within the intervals covered by the array: | |||
---|---|---|---|---|---|---|
iCOGS | PRACTICAL | BCAC | All | |||
LNCaP | H3K27Ac | ---- | 1605 | 3092 | 13482 | 13503 |
AR | 669 | 1274 | 5664 | 5671 | ||
LNCaP | H3K27Ac + MED12 | ---- | 685 | 1271 | 5428 | 5442 |
AR | 279 | 541 | 2310 | 2316 | ||
VCaP | H3K27Ac + BRD4 | ---- | 587 | 983 | 4218 | 4239 |
AR | 342 | 502 | 2148 | 2154 | ||
VCaP | BRD4 | ---- | 859 | 1595 | 7984 | 8066 |
AR | 23 | 60 | 233 | 233 | ||
VCaP | H3K27Ac | ---- | 3896 | 8440 | 38150 | 38444 |
PC | H3K27Ac + MED12 + BRD4 | ---- | 82 | 130 | 618 | 619 |
AR | 49 | 46 | 248 | 249 | ||
PC | ---- | AR | 496 | 1403 | 5950 | 5967 |
MCF7 | H3K27Ac + BRD4 | ---- | 8783 | 21058 | 93969 | 94858 |
ER | 4296 | 10607 | 45937 | 46222 | ||
MCF7 | H3K27Ac | ---- | 19270 | 48028 | 215997 | 217382 |
ER | 6710 | 16206 | 69743 | 70058 | ||
MCF7 | BRD4 | ---- | 280 | 495 | 2617 | 2641 |
ER | 34 | 66 | 282 | 282 | ||
MCF7 | ---- | ER | 158 | 371 | 1638 | 1639 |