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Table 5 QTLs detected for each trait and predicted genetic models observed in the corresponding genomic intervals in the current version of the reference genome of Citrus sinensis

From: QTL mapping for fruit quality in Citrus using DArTseq markers

Trait LG Gene Function
Height 4b Cs4g03340 Mitochondrial outer membrane protein porin of 36 kDa
Height 5 orange1.1 t01158 HAT family dimerization domain-containing protein, expressed; Putative AC transposase; Putative AC9 transposase
Diameter 8 Cs8g03420 Branched-chain-amino-acid aminotransferase 2, chloroplastic
A/D 4b Cs4g03340 Mitochondrial outer membrane protein porin of 36 kDa
Segments per fruit 5 orange1.1 t00827 Putative uncharacterized protein
Number of seeds 3 Cs3g07490 DNA polymerase epsilon, catalytic subunit A
Number of seeds 8 Cs8g02790 Actin-depolymerizing factor 5; Actin-depolymerizing factor (Fragment); Putative actin-depolymerizing factor 8; Actophorin; Cofilin; Cofilin-1B; Cofilin-1A; Cofilin/actin-depolymerizing factor homolog; Cofilin-4; Destrin
Ease of peeling 3 Cs3g07400 Transposable element protein, putative, Retrotrans_gag
Juice content 3   
Juice content 6b Cs6g02380 Serine carboxypeptidase-like 29; Virulence-related protein Nf314; Similar to Hordeum vulgare carboxypeptidase D
Acidity 8 Cs6g07720 Mitogen-activated protein kinase-binding protein 1; WD repeat-containing protein 62; Echinoderm microtubule-associated protein-like 5; Novel protein similar to vertebrate mouse mitogen-activated protein kinase binding protein 1-like (MAPKBP1) (Fragment)
Soluble Solids 5   
TSS/TTA 6b Cs6g07610 Putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
TI 4 Cs4g03200 Probable xyloglucan endotransglucosylase/hydrolase protein 23; Xyloglucan endotransglucosylase/hydrolase protein 22; Brassinosteroid-regulated protein BRU1
TI 5 Cs5g14460 Coiled-coil domain-containing protein 94 homolog; Coiled-coil domain-containing protein 94; Cell cycle control protein cwf16; Protein CWC16; Synaptic vesicle transporter SVOP and related transporters (Major facilitator superfamily) (ISS)
TI 6b Cs6g01810 Putative uncharacterized protein
TI 8 Cs7g05440 Lectin protein kinase family protein, putative, expressed; G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5; Probable receptor-like protein kinase At5g20050
TI 8   
Fruits per box 6b Cs8g03420 Branched-chain-amino-acid aminotransferase 2, chloroplastic; Branched-chain-amino-acid aminotransferase 6; Putative branched-chain-amino-acid aminotransferase 7