Table 5 QTLs detected for each trait and predicted genetic models observed in the corresponding genomic intervals in the current version of the reference genome of Citrus sinensis
From: QTL mapping for fruit quality in Citrus using DArTseq markers
Trait | LG | Gene | Function |
|---|---|---|---|
Height | 4b | Cs4g03340 | Mitochondrial outer membrane protein porin of 36Â kDa |
Height | 5 | orange1.1Â t01158 | HAT family dimerization domain-containing protein, expressed; Putative AC transposase; Putative AC9 transposase |
Diameter | 8 | Cs8g03420 | Branched-chain-amino-acid aminotransferase 2, chloroplastic |
A/D | 4b | Cs4g03340 | Mitochondrial outer membrane protein porin of 36Â kDa |
Segments per fruit | 5 | orange1.1Â t00827 | Putative uncharacterized protein |
Number of seeds | 3 | Cs3g07490 | DNA polymerase epsilon, catalytic subunit A |
Number of seeds | 8 | Cs8g02790 | Actin-depolymerizing factor 5; Actin-depolymerizing factor (Fragment); Putative actin-depolymerizing factor 8; Actophorin; Cofilin; Cofilin-1B; Cofilin-1A; Cofilin/actin-depolymerizing factor homolog; Cofilin-4; Destrin |
Ease of peeling | 3 | Cs3g07400 | Transposable element protein, putative, Retrotrans_gag |
Juice content | 3 | Â | Â |
Juice content | 6b | Cs6g02380 | Serine carboxypeptidase-like 29; Virulence-related protein Nf314; Similar to Hordeum vulgare carboxypeptidase D |
Acidity | 8 | Cs6g07720 | Mitogen-activated protein kinase-binding protein 1; WD repeat-containing protein 62; Echinoderm microtubule-associated protein-like 5; Novel protein similar to vertebrate mouse mitogen-activated protein kinase binding protein 1-like (MAPKBP1) (Fragment) |
Soluble Solids | 5 | Â | Â |
TSS/TTA | 6b | Cs6g07610 | Putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic; Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha |
TI | 4 | Cs4g03200 | Probable xyloglucan endotransglucosylase/hydrolase protein 23; Xyloglucan endotransglucosylase/hydrolase protein 22; Brassinosteroid-regulated protein BRU1 |
TI | 5 | Cs5g14460 | Coiled-coil domain-containing protein 94 homolog; Coiled-coil domain-containing protein 94; Cell cycle control protein cwf16; Protein CWC16; Synaptic vesicle transporter SVOP and related transporters (Major facilitator superfamily) (ISS) |
TI | 6b | Cs6g01810 | Putative uncharacterized protein |
TI | 8 | Cs7g05440 | Lectin protein kinase family protein, putative, expressed; G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5; Probable receptor-like protein kinase At5g20050 |
TI | 8 | Â | Â |
Fruits per box | 6b | Cs8g03420 | Branched-chain-amino-acid aminotransferase 2, chloroplastic; Branched-chain-amino-acid aminotransferase 6; Putative branched-chain-amino-acid aminotransferase 7 |