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Table 1 Description and expression of up-regulated genes encoding hydrolytic enzymes

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

  

1

3

6

12

24

48

1. Lipid Degradation

 SS1G_07661

cutinase (SsCuta)

3

3.9

4.3

4.7

3.4

-

 SS1G_13386

cutinase

-

-

-

-

14.9

29.6

 SS1G_12907

cutinase

-

-

-

-

29.7

236

 SS1G_09557

lipase/esterase

3.4

5.5

6.5

6.1

2.6

-

 SS1G_11473

lipase/esterase

2.2

-

-

-

-

3.2

 SS1G_05990

lipase/esterase

-

-

-

-

2.2

-

 SS1G_00767

lipase/esterase

-

-

-

-

-

34.4

 SS1G_03597

lipase/esterase

-

-

-

-

-

5.1

 SS1G_01849

lipase/esterase

-

-

-

-

-

2.7

 SS1G_08869

lipase class 3

-

-

-

-

-

2.8

 SS1G_14146

extracellular lipase

-

-

-

-

31.5

38.7

 SS1G_04490

extracellular lipase

-

-

-

-

2.5

3

 SS1G_00877

extracellular lipase

-

-

-

-

-

4.3

 SS1G_14441

triacylglycerol lipase

-

-

-

-

5

6.9

 SS1G_13982

triacylglycerol lipase

-

-

-

-

4.8

27.5

 SS1G_01472

triacylglycerol lipase

-

-

-

-

3.6

13.1

 SS1G_03007

alpha beta-hydrolase (esterase)

-

2.6

2.6

-

-

-

 SS1G_09718

alpha beta-hydrolase (esterase/lipase)

-

2.1

2.9

-

-

-

 SS1G_01703

alpha beta-hydrolase (esterase/lipase)

-

3.9

3.5

2.2

3.8

6.5

 SS1G_13361

alpha beta-hydrolase (esterase/lipase)

-

-

-

2.3

3.2

2.2

 SS1G_11402

alpha beta hydrolase (esterase/lipase)

-

-

-

3.6

4.8

3.7

 SS1G_13263

alpha beta hydrolase (esterase/lipase)

-

-

-

-

3.8

3.8

 SS1G_08133

alpha beta-hydrolase (esterase/lipase)

-

-

-

-

-

2.5

 SS1G_02163

alpha beta-hydrolase (esterase/lipase)

-

-

-

-

-

12.5

 SS1G_01953

GDSL lipase acylhydrolase family protein

3.6

4

5

4.9

4.8

5.6

 SS1G_13560

GDSL lipase acylhydrolase family protein

-

-

-

-

2.7

2.7

 SS1G_06389

GDSL lipase acylhydrolase family protein

-

-

-

-

-

2.7

 SS1G_02708

cellulose-binding GDSL lipase

-

-

-

-

3.3

7.8

 SS1G_14289

cellulose-binding GDSL lipase

-

-

-

-

5.3

6.6

 SS1G_03610

cellulose-binding GDSL lipase

-

-

-

-

5.1

22.4

 SS1G_04592

cellulose-binding GDSL lipase

-

-

-

-

11.8

9.4

 SS1G_11930

carboxylesterase/lipase (cholinesterase)

4

3.9

8.9

5.2

-

-

 SS1G_00376

carboxylesterase/lipase (cholinesterase)

-

-

-

-

4.4

9.2

 SS1G_09613

carboxylesterase/lipase (cholinesterase)

-

-

-

-

-

4.7

 SS1G_04422

carboxylesterase/lipase (cholinesterase)

-

-

-

-

-

3.2

 SS1G_11853

carboxylesterase/lipase (cholinesterase)

-

-

-

-

-

3

 SS1G_04030

lysophospholipase

-

-

3.6

-

2.3

-

 SS1G_10482

lysophospholipase

-

-

-

-

-

4.1

2. Polysaccharide Degradation

  2.1 Cellulose

  SS1G_08493

beta-1,4-endo-glucanase

2.6

-

-

-

-

-

  SS1G_00891

beta-1,4-endo-glucanase (cellulase)

-

4.5

5.8

3.5

-

3.8

  SS1G_01485

beta-glucanase

-

-

-

-

-

2.1

  SS1G_09365

endo-glucanase

-

-

-

-

2.7

-

  SS1G_03387

endo-glucanase

-

-

-

-

5.3

41.4

  SS1G_08837

endo-glucanase

-

-

-

-

10.3

36.4

  SS1G_04945

endo-glucanase

-

-

-

-

-

2.3

  SS1G_01828

endo-glucanase

-

-

-

-

-

2.6

  SS1G_09821

endo-glucanase

-

-

-

-

-

144

  SS1G_03041

endo-glucanase

-

-

-

-

-

292

  SS1G_00321

endo-glucanase

-

-

-

-

-

4.2

  SS1G_00471

endo-glucanase

-

-

-

-

-

2.1

  SS1G_06037

exo-glucanase

-

3

3.2

-

9.9

12.3

  SS1G_02334

exo-glucanase (cellobiohydrolyase)

-

-

-

-

3.8

-

  SS1G_09020

exo-glucanase

-

-

-

-

15.1

79

  SS1G_00892

exo-glucanase

-

-

-

-

5.4

22.2

  SS1G_09118

exo-glucanase

-

-

-

-

-

2.5

  SS1G_02245

exo-glucanase

-

-

-

-

-

3.3

  SS1G_13872

exo-glucanase

-

-

-

-

-

7.6

  SS1G_02501

Concanavalin A-like lectin/glucanase

5.1

8.7

6.1

3.1

-

-

  SS1G_08907

glycoside hydrolase (beta-glucanase)

2.6

-

-

-

-

-

  SS1G_07863

cellobiose dehydrogenase

3.7

-

-

-

-

22.1

  SS1G_05151

cellobiose dehydrogenase

-

-

-

-

5.9

6.6

  SS1G_05118

beta-glucosidase

2.4

-

-

-

-

-

  SS1G_01662

beta-glucosidase

-

-

-

-

2.8

9.5

  SS1G_09366

beta-glucosidase

-

-

-

-

2.8

8

  SS1G_06304

beta-glucosidase

-

-

-

-

2.6

6.8

  SS1G_07847

beta-glucosidase

-

-

-

-

3.1

4.7

  SS1G_07146

beta-glucosidase

-

-

-

-

7.4

18.7

  SS1G_13255

beta-glucosidase

-

-

-

-

40.4

54.8

  SS1G_05368

beta-glucosidase

-

-

-

-

3.2

4.6

  SS1G_12622

beta-glucosidase

-

-

-

-

-

2.1

  SS1G_07162

beta-1,4-glucosidase

-

-

-

-

-

2.3

  SS1G_09129

beta-glucosidase

-

-

-

-

-

13.1

  SS1G_04264

beta-glucosidase

-

-

-

-

-

2.2

  SS1G_01021

beta-glucosidase

-

-

-

-

-

5.2

2.2 Pectin

 SS1G_10167

endo-polygalacturonase (SSPG1)

-

-

-

-

3.7

64.6

 SS1G_10698

endo-polygalacturonase (SSPG3)

-

-

-

-

-

5.5

 SS1G_05832

exo-polygalacturonase

4.1

6.5

-

-

4.2

32.4

 SS1G_02553

exo-polygalacturonase (exoPG2)

-

-

-

-

-

22.6

 SS1G_04207

exo-polygalacturonase (exoPG1)

-

-

-

-

14.6

168

 SS1G_12057

exo-polygalacturonase

-

-

-

-

-

4.2

 SS1G_03540

pectin lyase

-

-

-

-

4.5

3.3

 SS1G_10071

pectin lyase

-

-

-

-

-

6.2

 SS1G_14449

pectin lyase

-

-

-

-

-

2.4

 SS1G_04551

pectin methylesterase

-

-

-

-

11.6

35.8

 SS1G_00332

pectin methylesterase

-

-

-

-

33.9

178

 SS1G_03286

pectin methylesterase

-

-

-

-

4.8

16.5

 SS1G_00468

pectin methylesterase

-

-

-

-

-

21.4

 SS1G_04095

rhamnogalacturanan acetylhydrolase

2.8

6.2

7.7

5.3

2.7

-

 SS1G_12048

rhamnogalacturanan acetylhydrolase

-

-

-

-

-

33.5

 SS1G_11992

rhamnogalacturonan acetylesterase

-

-

-

-

-

37.5

 SS1G_09857

rhamnogalacturonyl hydrolase

-

-

-

-

-

8.6

 SS1G_12964

alpha-l-rhamnosidase

-

-

17.5

-

-

-

 SS1G_13501

alpha-l-rhamnosidase

-

-

-

-

3.1

21.2

 SS1G_04541

alpha-l-rhamnosidase

-

-

-

-

2

8.3

 SS1G_08229

rhamnogalacturonase

2.1

4.5

4.5

2.6

-

-

 SS1G_07039

rhamnogalacturonase

-

-

-

-

-

6

 SS1G_04552

endo-xylogalacturonan hydrolase

-

-

-

-

7.1

15.9

2.3 Hemicellulose

 SS1G_12191

endo-1,4-beta-xylanase

-

5.3

7.9

4.6

6.4

25

 SS1G_10092

endo-beta-xylanase

-

-

-

-

-

155

 SS1G_03618

endo-beta-xylanase

-

-

-

-

-

451

 SS1G_07749

endo-beta-xylanase

-

-

-

-

-

56.7

 SS1G_05140

xylanase

3.6

3.5

4.2

4.3

3.4

8.1

 SS1G_08104

acetylxylan esterase

23

14.2

58.3

42.1

26

107

 SS1G_05434

acetylxylan esterase

-

-

-

-

4

11.8

 SS1G_00746

beta-mannosidase

-

-

-

-

6.6

42.3

 SS1G_05977

beta-mannosidase

-

-

-

-

3.6

6.4

 SS1G_08208

endo-1,4-beta-mannosidase

-

-

-

-

3.6

8.9

 SS1G_08118

alpha-xylosidase

-

-

-

-

4.5

3.8

 SS1G_09367

alpha-xylosidase

-

-

-

-

2.2

-

 SS1G_11535

alpha-fucosidase

-

-

-

-

-

2.5

 SS1G_04662

alpha-galactosidase

-

-

-

-

4.5

3.9

 SS1G_03386

alpha-galactosidase

-

-

-

-

-

3.7

 SS1G_07904

feruloyl esterase

-

-

-

-

3.6

12

 SS1G_02462

alpha-l-arabinofuranosidase

-

-

-

-

5.3

21

 SS1G_03602

alpha-l-arabinofuranosidase

-

-

-

-

6.3

17.6

2.4 Arabinogalactans

 SS1G_01216

arabinogalactan endo-beta-galactosidase

4.1

9.6

11.9

7.2

4.1

-

 SS1G_11585

arabinogalactan endo-beta-galactosidase

-

-

-

-

-

19.3

 SS1G_02618

galactan 1,3-beta-galactosidase

-

-

-

-

5.7

11

 SS1G_10842

beta-galactosidase

4.1

2.5

2.4

-

2.2

5.8

 SS1G_11763

beta-galactosidase

-

-

-

-

4.7

-

 SS1G_01572

beta-galactosidase

-

-

-

-

6.8

18.3

 SS1G_03647

beta-galactosidase

-

-

-

-

3.5

6.9

 SS1G_02781

beta-galactosidase

-

-

-

-

-

2.7

 SS1G_09866

1,6-beta-galactanase

-

4.8

4.5

3.1

3

12.4

 SS1G_11922

arabinan endo-1,5-alpha-L-arabinosidase

-

-

-

-

144.3

245

 SS1G_01238

beta-D-glucuronidase

7.6

-

4.7

-

-

-

 SS1G_02620

beta-glucuronidase

-

-

-

-

3.5

8.2

2.5 Lignin

 SS1G_04196

dihydrogeodin oxidase/laccase

-

3.1

2.6

4.6

-

-

 SS1G_06365

dihydrogeodin oxidase/laccase

-

3.1

5.7

4.1

-

3.4

 SS1G_05112

dihydrogeodin oxidase/laccase

-

-

-

-

-

6

2.6 Starch

 SS1G_01776

alpha-amylase

-

-

2.1

-

-

-

 SS1G_11100

alpha-amylase

-

-

-

-

6.6

5.2

 SS1G_01083

alpha-glucosidase

2.4

4.7

3

-

4.6

5.3

 SS1G_01005

alpha-glucosidase

-

-

-

-

9.2

7.2

2.7 Mannans

 SS1G_10867

endo-1,6-alpha-mannosidase

-

-

-

-

6.4

-

 SS1G_04468

endo-1,6-alpha-mannosidase

-

-

-

-

7.5

25.3

 SS1G_12937

endo-1,6-alpha-mannosidase

-

-

-

-

-

10.4

 SS1G_05110

endo-1,6-alpha-mannosidase

-

-

-

-

-

3.5

 SS1G_11579

endo-1,6-alpha-mannosidase

-

-

-

-

-

3.5

 SS1G_09229

alpha 1,2 mannosidase

-

-

-

-

55

40.2

 SS1G_00505

alpha-1,2-mannosidase

-

-

-

-

9.8

4.7

 SS1G_04148

alpha-mannosidase

-

-

-

-

4.1

4

 SS1G_02022

alpha-mannosidase

-

-

-

-

12.5

10.9

 SS1G_04200

alpha-mannosidase

-

-

-

-

6

56.3

 SS1G_01334

alpha-mannosidase

-

-

-

-

-

11.5

2.8 Callose

 SS1G_01422

1,3 (4)-beta-D-glucanase

2.2

-

-

-

-

-

 SS1G_10048

1,3 (4)-beta-D-glucanase

-

2.1

-

-

2.1

-

3. Protein Degradation

  3.1 Proteases

  SS1G_10992

caspase domain-containing protease

2.1

-

-

-

-

7.1

  SS1G_00862

cysteine protease (calpain family)

6.1

5.1

6.3

3.4

3.2

-

  SS1G_09978

peptidase (family 41 protein)

3.2

-

3.2

2.9

-

6.4

  SS1G_07836

(acid) non-aspartyl protease (ACP1)

-

-

-

-

-

40.4

  SS1G_05329

aspartyl protease

12.2

-

-

-

-

4.6

  SS1G_02870

aspartyl protease

2

2.6

3

3

2.7

3.3

  SS1G_03181

aspartyl protease

-

-

-

-

3.9

16.6

  SS1G_06534

serine protease (trypsin-like)

2.8

3

-

-

-

3.9

  SS1G_12419

serine protease (subtilisin-like)

-

-

3

-

-

-

  SS1G_07655

serine protease (subtilisin-like)

-

-

-

-

8.5

19.8

  SS1G_02423

serine protease (subtilisin-like)

-

-

-

-

-

2.2

  SS1G_03282

serine protease (subtilisin-like)

-

-

-

-

-

2.2

  SS1G_07168

serine protease (subtilisin-like)

-

-

-

-

-

2.5

  SS1G_12210

serine protease (subtilisin-like)

-

-

-

-

-

7.3

  SS1G_05348

metalloprotease

-

-

-

-

-

2.6

  SS1G_05349

metalloprotease

-

-

-

-

-

3.1

3.2 Peptidases

 SS1G_04565

cytosolic no-pecific dipeptidase

-

-

-

-

26

9.2

 SS1G_10529

cytosolic no-pecific dipeptidase

-

-

-

-

-

2.2

 SS1G_04140

dipeptidyl-peptidase

-

2.5

-

-

-

-

 SS1G_03087

membrane dipeptidase

-

-

-

-

-

2.6

 SS1G_03392

proline dipeptidase

-

-

-

-

4.5

-

 SS1G_08920

proline dipeptidase

-

-

-

-

2.4

2

 SS1G_04958

tripeptidyl-peptidase

-

-

-

-

5

22.9

 SS1G_07268

tripeptidyl-peptidase

-

-

-

-

3.5

2.1

 SS1G_13922

tripeptidyl peptidase

-

-

-

-

8.9

50.4

 SS1G_09225

tripeptidyl peptidase

-

-

-

-

6.9

16.9

 SS1G_09268

tripeptidyl-peptidase

-

-

-

-

5.9

3.4

 SS1G_02857

tripeptidyl peptidase

-

-

-

-

6.4

2.5

 SS1G_03518

tripeptidyl peptidase

-

-

-

-

-

6.1

 SS1G_01236

tripeptidyl peptidase

-

-

-

-

-

9.7

 SS1G_08558

prolyl aminopeptidase

2.5

4.3

4.4

3.4

2.4

2.2

 SS1G_00617

prolyl aminopeptidase

-

-

-

9.5

4.9

5.2

 SS1G_12775

prolyl aminopeptidase

-

-

-

-

-

3

 SS1G_05449

carboxypeptidase

-

2.5

-

-

3.3

13.3

 SS1G_12413

carboxypeptidase

-

-

-

-

3.5

4.2

 SS1G_08855

carboxypeptidase

-

-

-

-

3.7

4.1

 SS1G_03361

carboxypeptidase

-

-

-

-

4.2

21.1

 SS1G_09475

carboxypeptidase

-

-

-

-

-

13.1

 SS1G_13633

carboxypeptidase

-

-

-

-

-

7.6

 SS1G_12499

carboxypeptidase

-

-

-

-

-

11.5

 SS1G_04819

carboxypeptidase

-

-

-

-

-

5.5

4. Other Hydrolytic Enzymes

 SS1G_01113

metallo-dependent amidohydrolase

-

-

-

-

3.2

-

 SS1G_09143

metallo-dependent amidohydrolase

-

-

-

-

-

6.1

 SS1G_02141

alpha beta-hydrolase

4.6

-

-

-

-

-

 SS1G_11096

alpha beta-hydrolase

-

-

-

2.1

5.7

2.6

 SS1G_08093

alpha beta-hydrolase (epoxide hydrolase)

-

-

-

-

4.4

9.2

 SS1G_04475

endo-alpha-1,4-polygalactosaminidase

3

-

-

-

-

3.8

 SS1G_11842

sialidase

3.1

-

3.6

-

-

9.8

 SS1G_01389

polysaccharide lyase family 7 protein

-

4.9

4.9

5.2

-

-

 SS1G_01493

glycoside hydrolase family 3 protein

-

-

-

-

4.2

17

 SS1G_09000

glycoside hydrolase family 5 protein

2.7

-

-

-

2.7

-

 SS1G_02369

glycoside hydrolase family 12 protein

-

-

-

-

-

3.4

 SS1G_04497

glycoside hydrolase family 16 protein

-

-

-

-

-

2

 SS1G_09789

glycoside hydrolase family 16 protein

-

-

-

-

-

2.8

 SS1G_06426

glycoside hydrolase family 43 protein

-

-

-

-

2.4

5.9

 SS1G_07515

glycoside hydrolase family 43 protein

-

-

-

-

138

518

 SS1G_07656

glycoside hydrolase family 61 protein

-

-

-

-

-

93.6

 SS1G_09251

glycoside hydrolase family 61 protein

-

-

-

-

-

9.1

 SS1G_12106

glycoside hydrolase family 76 protein

-

-

-

-

3

13

 SS1G_12083

glycoside hydrolase family 115 protein

-

-

-

-

7.8

17

 SS1G_04152

glycoside hydrolase family 125 protein

-

2.2

-

-

6

12.5

 SS1G_12917

glycoside hydrolase family 128 protein

-

-

-

-

2.3

17.3

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. More information about the genes can be found in Additional file 3: Table S3