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Table 2 Description and expression of up-regulated genes involved in secondary metabolite synthesis

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

  

1

3

6

12

24

48

1. Polyketides

 SS1G_02356

polyketide synthase (PKS1)c

-

-

-

5.1

7.5

5

 SS1G_05681

polyketide synthase (PKS4)c

-

-

3.4

2.5

-

-

 SS1G_09237

polyketide synthase (PKS6)c

-

-

-

-

-

34.3

 SS1G_01997

polyketide synthase (PKS8)c

3.1

4.9

6.4

4.5

-

-

 SS1G_11789

polyketide synthase (PKS12)c

-

2.3

-

-

-

2.4

 SS1G_11404

polyketide synthase (PKS14)c

2.8

2.1

2.9

4.7

4.7

9.2

 SS1G_04125

polyketide synthase (PKS16)c

2.7

3

-

-

3.5

-

 SS1G_05787

polyketide synthase (PKS18)c

-

-

-

-

3.5

3

 SS1G_03591

polyketide synthase (PKS21)c

-

-

2.5

-

2.2

-

 SS1G_04127

polyketide synthase

2.1

-

-

-

2.9

-

 SS1G_10474

polyketide synthase

4

-

-

-

5.2

-

 SS1G_05788

polyketide synthase

-

-

-

2.5

4.9

3.5

 SS1G_11352

DBSA oxidoreductase (FmE)

4.4

2.8

3.3

-

-

-

 SS1G_09239

FAD-dependent monooxygenase (similar to BcBOA8)

-

-

-

-

10.9

17.6

 SS1G_02592

zinc-binding oxidoreductase (ToxD)

4

-

-

4.2

5.8

17.8

 SS1G_02338

chalcone and stilbene synthase (CHS1)

-

-

-

-

2.1

-

2. Non-ribosomal Peptides

 SS1G_08561

non-ribosomal peptide synthase (NRPS1)c

-

-

-

4.7

8.9

32.5

 SS1G_03693

siderophore peptide synthase (NRPS2)c

-

2.2

2.3

-

4

3.1

 SS1G_06185

siderophore peptide synthase (NRPS3)c

3.6

8.2

8.8

9.3

4.7

-

 SS1G_10563

non-ribosomal peptide synthase (NRPS5)c

-

-

-

-

2.3

-

 SS1G_12986

NRPS-like enzyme

-

6.3

5.2

4.3

5.8

7

 SS1G_09846

NRPS-like enzyme

2.9

2.2

2.6

-

2.1

-

 SS1G_03440

NRPS-like enzyme

-

-

-

3.5

4

-

 SS1G_00726

NRPS-like enzyme

-

-

-

18.8

-

-

 SS1G_01217

NRPS-like enzyme

-

-

-

5.4

10.5

7.7

3. Other

 SS1G_09177

siroheme synthase

10.9

8.7

8.3

5.7

-

-

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. cGene abbreviations used by Amselem et al., 2011 [38]
  4. More information about the genes can be found in Additional file 3: Table S3