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Table 4 Description and expression of up-regulated genes encoding transporters

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

1

3

6

12

24

48

1. ABC transporter superfamily

 1.1 Pleiotropic Drug Resistance

  SS1G_06715

Pleiotropic Drug Resistance (PDR)

2.0

-

-

-

-

-

  SS1G_13659

pleiotropic drug resistance-like (PDR)

-

-

-

-

3.1

13.5

  SS1G_04483

pleiotropic drug resistance-like (PDR)

-

-

-

-

-

4.6

1.2 Multi Drug Resistance

 SS1G_04756

ABC multidrug transporter

3.4

7.9

6.5

3.7

2.4

-

 SS1G_07287

ABC multidrug transporter

3.5

3.2

2.6

-

-

2.2

 SS1G_03324

ABC multidrug transporter

3.5

4.8

4.4

-

-

-

 SS1G_13112

ABC multidrug transporter

-

4.1

6.2

3.9

-

-

 SS1G_02000

ABC multidrug transporter

-

-

3.9

3.2

-

-

 SS1G_06062

ABC multidrug transporter

-

-

-

-

2.4

2.8

1.3 Other families

 SS1G_04757

mitochondrial ATP-binding cassette protein involved in iron homeostasis

-

6.5

5.1

3.4

-

-

 SS1G_07963

ABC transporter with iron-containing redox enzyme with death domains

-

-

-

-

4.0

8.5

 SS1G_12070

ABC lipid transporter

-

-

-

-

-

2.6

 SS1G_10747

ABC peroxysomal fatty Acyl CoA transporter

-

-

-

-

-

3.2

 SS1G_05904

ABC peroxysomal fatty Acyl CoA transporter

-

-

-

-

-

2.0

2. MFS transporter superfamily

  2.1 Efflux pumps and drug resistance

  SS1G_10155

MFS drug efflux and drug resistance

10.1

5.5

3.7

-

-

-

  SS1G_11948

MFS drug efflux and drug resistance

2.8

6.7

5.5

-

-

-

  SS1G_00919

MFS gliotoxin efflux transporter

-

2.7

3.0

-

-

-

  SS1G_09759

MFS aflatoxin efflux transporter

-

8.0

-

-

-

-

  SS1G_05556

MFS drug efflux and drug resistance

-

-

2.4

-

-

-

  SS1G_06662

MFS toxin efflux pump

-

-

3.0

-

-

-

  SS1G_05572

MFS drug resistance transporter

11.4

2.9

-

-

-

-

  SS1G_02358

MFS drug resistance transporter

-

-

-

4.1

3.7

4.3

  SS1G_12101

MFS drug resistance transporter

-

-

-

-

2.4

-

  SS1G_02394

MFS drug resistance transporter

-

-

-

-

-

4.6

  SS1G_05756

MFS drug resistance transporter

-

-

-

-

-

15.2

  SS1G_10566

MFS drug resistance transporter

-

-

-

-

-

5.5

  SS1G_05556

MFS drug resistance transporter

-

-

-

-

-

2.0

  SS1G_05095

MFS fungal trichothecene efflux pump (TRI12)

-

-

-

-

-

7.1

  SS1G_05145

MFS fungal trichothecene efflux pump (TRI12)

-

-

-

-

5.0

-

  SS1G_13024

MFS drug resistance transporter

-

-

-

-

-

3.6

  SS1G_11919

MFS multidrug transporter

-

2.7

2.3

-

-

-

  SS1G_02623

MFS multidrug transporter

-

-

-

-

-

4.7

  SS1G_08554

MFS multidrug transporter

-

-

-

-

-

2.9

  SS1G_10279

MFS multidrug transporter

-

-

-

-

-

2.1

  SS1G_09892

MFS multidrug transporter

-

-

-

-

-

10.2

  SS1G_02931

MFS multidrug transporter

-

-

-

-

-

2.8

  SS1G_02048

spermidine drug resistance transporter

2.1

-

-

-

-

3.2

2.2 Sugar transporters

 SS1G_04841

hexose transporter

4.1

2.9

-

-

-

-

 SS1G_13734

hexose transporter HXT13

-

2.1

-

-

-

-

 SS1G_04273

hexose transporter

-

-

-

-

6.1

15.8

 SS1G_12412

hexose transporter

-

-

2.1

-

2.5

2.4

 SS1G_09710

MFS sugar transporter

-

-

2.7

2.6

4.8

6.5

 SS1G_06023

MFS monosaccharide transporter

6.9

6.7

7.0

4.9

-

-

 SS1G_10125

MFS monosaccharide transporter

2.1

2.4

-

-

-

-

 SS1G_06620

MFS monosaccharide transporter

-

-

-

-

2.4

-

 SS1G_07618

MFS monosaccharide transporter

-

-

-

-

-

2.1

 SS1G_08794

MFS sucrose transporter

-

-

2.6

-

-

-

 SS1G_04208

MFS sugar transporter

-

-

-

4.0

36.7

49.2

 SS1G_10413

MFS sugar transporter

-

-

-

2.3

4.6

4.8

 SS1G_06751

MFS sugar transporter

-

-

-

-

2.0

-

 SS1G_08117

MFS sugar transporter

-

-

-

-

2.8

-

 SS1G_11591

MFS sugar transporter

-

-

-

-

10.7

9.4

 SS1G_01523

MFS sugar transporter

-

-

-

-

13.1

12.5

 SS1G_00928

MFS sugar transporter

-

-

-

-

7.2

10.6

 SS1G_08467

MFS sugar transporter

-

-

-

-

2.9

2.5

 SS1G_07132

MFS sugar transporter

-

-

-

-

8.3

6.3

 SS1G_01759

MFS sugar transporter

-

-

-

-

-

2.8

 SS1G_14316

MFS sugar transporter

-

-

-

-

-

6.1

 SS1G_06402

MFS sugar transporter

-

-

-

-

-

16.2

 SS1G_01302

MFS sugar transporter

-

-

-

-

-

47.6

 SS1G_03579

MFS sugar transporter

-

-

-

-

-

4.1

 SS1G_05006

MFS sugar transporter

-

-

-

-

-

11.8

 SS1G_08982

MFS quinate transporter

-

-

-

-

18.9

26.1

 SS1G_09293

MFS quinate transporter

-

-

-

-

3.5

2.9

 SS1G_08981

MFS quinate transporter

-

-

-

-

49.3

38.4

 SS1G_00139

MFS carbohydrate transporter

-

3.1

2.2

2.0

-

-

 SS1G_04149

MFS carbohydrate transporter

-

3.2

2.5

-

-

8.2

 SS1G_07210

MFS carbohydrate transporter

-

-

-

-

2.5

2.3

 SS1G_08328

MFS carbohydrate transporter

-

-

-

-

5.8

4.1

 SS1G_13671

MFS carbohydrate transporter

-

-

-

-

2.4

-

 SS1G_14028

MFS carbohydrate transporter

-

-

-

-

2.1

2.0

 SS1G_13819

MFS carbohydrate transporter

-

-

-

-

-

8.1

 SS1G_11142

MFS monocarboxylate transporter

-

-

-

-

3.6

-

 SS1G_01656

MFS monocarboxylate transporter

-

-

-

-

-

2.2

 SS1G_07861

MFS galactonate transporter

2.8

-

-

-

-

-

 SS1G_09368

MFS galactonate transporter

-

-

3.6

5.8

8.3

9.0

 SS1G_09803

MFS galactonate transporter

-

-

-

4.2

14.9

13.1

 SS1G_01055

MFS galactonate transporter

-

-

-

-

3.8

-

 SS1G_10065

MFS galactonate transporter

-

-

-

-

73.2

487.6

 SS1G_11224

MFS galactonate transporter

-

-

-

-

3.3

2.2

 SS1G_11609

MFS galactonate transporter

-

-

-

-

3.0

13.0

 SS1G_12649

MFS galactonate transporter

-

-

-

-

6.9

2.9

 SS1G_12698

MFS galactonate transporter

-

-

-

-

4.0

5.7

 SS1G_05090

MFS galactonate transporter

-

-

-

-

7.2

5.7

 SS1G_10896

MFS alpha glucoside:h + symporter

-

-

-

-

4.4

2.3

 SS1G_13094

MFS alpha glucoside:h + symporter

-

-

-

-

5.0

18.6

 SS1G_03673

4-hydroxyphenylacetate permease and sugar transporter

-

-

-

-

-

5.3

 SS1G_04849

MFS-fucose permease

-

-

-

-

-

3.1

 SS1G_02117

lactose permease

-

-

-

2.8

23

31.3

 SS1G_08398

maltose permease

-

4.2

-

-

-

3.8

 SS1G_07922

maltose permease

-

-

-

-

2.2

-

 SS1G_12954

maltose permease

-

-

-

-

-

8.2

2.3 Oligopeptides

 SS1G_02676

oligopeptide transporter

2.0

-

-

-

4.0

5.2

 SS1G_09296

oligopeptide transporter

-

-

-

-

3.3

3.1

 SS1G_09297

oligopeptide transporter

-

-

-

-

-

2.8

 SS1G_10121

MFS peptide transporter

5.9

7.4

5.7

3.0

-

-

 SS1G_07522

MFS peptide transporter

-

-

2.1

-

-

4.1

2.4 others

 SS1G_08628

MFS transporter

5.9

6.6

5.6

3.0

2.4

-

 SS1G_04769

MFS transporter

-

-

-

-

-

7.3

 SS1G_13941

MFS general substrate transporter

-

3.0

-

-

-

-

 SS1G_13194

MFS general substrate transporter

-

-

-

-

2.2

-

 SS1G_07517

MFS vacuole effluxer Atg22 transporter

-

3.5

3.5

-

2.7

2.4

 SS1G_04978

MFS sulfate transporter

-

-

-

-

2.2

-

 SS1G_12690

MFS nitrite transporter

-

7.0

12.2

10.7

-

-

 SS1G_02906

MFS nicotinic acid transporter

-

-

-

-

3.8

2.1

3. Amino acid transporters

 SS1G_08387

amino acid transporter

-

-

-

3.0

10.4

9.5

 SS1G_11233

amino acid transporter

-

-

-

-

2.7

-

 SS1G_01802

amino acid transporter

-

-

-

-

-

3.9

 SS1G_09839

amino acid transporter

-

-

-

-

-

13.3

 SS1G_14102

choline, amino acid permease transport

-

-

-

2.3

-

-

 SS1G_05293

choline, amino acid permease transport

-

-

-

-

-

5.0

 SS1G_06535

choline, amino acid permease transport

-

-

-

-

-

5.1

 SS1G_06536

choline, amino acid permease transport

-

-

-

-

-

3.1

 SS1G_04884

ammonium transporter

-

-

-

-

6.8

-

 SS1G_11781

arginine permease

2.2

-

-

-

-

-

 SS1G_11563

amino acid permease

3.2

4.7

4.9

5.5

-

-

 SS1G_02549

amino acid permease

3.1

4.2

3.9

2.2

-

-

 SS1G_14381

amino acid permease

2.6

4.6

3.8

3.3

-

-

 SS1G_13916

amino acid permease

9.1

11.5

8.6

6.9

2.3

-

 SS1G_10633

amino acid permease

-

2.1

2.7

2.1

2.4

4.9

 SS1G_03403

amino acid permease

-

-

-

-

3

-

 SS1G_11780

amino acid permease

-

-

-

-

-

2.9

 SS1G_06841

amino acid permease

-

-

-

-

-

2.7

Others

 SS1G_03654

formate nitrate transporter

3.0

3.2

3.1

3.4

4.0

3.9

 SS1G_09621

mitochondrial phosphate carrier protein

3.8

5.0

4.4

3.3

-

3.0

 SS1G_01720

C4-dicarboxylate transporter

20.2

19.0

18.8

8.5

-

-

 SS1G_02619

C4-dicarboxylate transporter

2.2

2.7

2.6

-

-

-

 SS1G_12337

calcium proton exchanger

2.5

3

2.2

-

-

2.6

 SS1G_02802

putative Mg2+ transporter

2.6

2.8

2.4

-

-

3.8

 SS1G_02548

UDP-N-acetylglucosamine transporter

2.4

2.8

2.8

-

-

-

 SS1G_11564

lysosomal cystine transporter

2.1

3.0

2.5

-

-

-

 SS1G_06298

cation efflux family transporter

3.1

4.0

3.5

-

-

-

 SS1G_09822

monocarboxylate permease-like protein

2.1

2.5

-

-

-

2.7

 SS1G_06910

vacuolar iron transporter

2.7

-

2.3

-

3.1

4.0

 SS1G_03019

carnitine mitochondrial carrier protein

2.4

-

2.6

-

-

3.4

 SS1G_08146

AGZA family xanthine/uracil permease

3

-

-

-

-

-

 SS1G_10280

polyamine transport protein

-

2.7

2.1

-

-

-

 SS1G_04686

phosphate/sulfate permease

-

4.2

-

-

3.3

-

 SS1G_12991

cation, potassium transporter

-

-

2.4

-

-

-

 SS1G_08795

succinate fumarate, mitochondrial transporter

-

-

5.4

-

-

8.0

 SS1G_06006

purine-cytosine permease

-

-

-

6.4

3.7

-

 SS1G_03305

solute carrier protein

-

-

-

3.0

-

-

 SS1G_11712

cation, magnesium transporter

-

-

-

-

2.4

-

 SS1G_07645

cation, potassium transporter

-

-

-

-

2.2

2.5

 SS1G_02434

mitochondrial 2-oxoglutarate malate carrier protein

-

-

-

-

45.3

44.7

 SS1G_06806

3-oxoacyl-[acyl-carrier protein] reductase

-

-

-

-

3.7

5.3

 SS1G_10890

acetyl-CoA acetyltransferases

-

-

-

-

3.0

3.4

 SS1G_04606

arsenite efflux transporter

-

-

-

-

-

2.8

 SS1G_01231

sulfate permease

-

-

-

-

-

5.7

 SS1G_01111

cytosine permease

-

-

-

-

-

3.6

 SS1G_10204

mitochondrial carrier protein

-

-

-

-

-

2.2

 SS1G_06998

peroxisomal, mitochondrial carrier protein

-

-

-

-

-

2.0

 SS1G_04019

mitochondrial carrier protein

-

-

-

-

-

2.5

 SS1G_08663

solute carrier protein

-

-

-

-

-

2.5

 SS1G_05281

fatty acid transporter involves in acyl-CoA synthetase)

-

-

-

-

-

4.3

 SS1G_06664

nucleoside transporter

3.7

5.7

5.7

4.3

2.8

-

 SS1G_06212

nucleoside transporter

3.2

-

-

-

-

-

 SS1G_04537

nucleoside transporter

-

-

-

-

2.6

-

 SS1G_09667

nucleoside transporter

-

-

-

-

-

2.3

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. More information about the genes can be found in Additional file 3: Table S3
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