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Table 7 Description and expression of up-regulated genes involved in signaling or gene regulation

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

  

1

3

6

12

24

48

1. Protein Kinases

 SS1G_10983

MAPKK kinase (SsBCK1)

4.7

5.4

4.4

2.4

-

-

 SS1G_11525

protein kinase-like protein

2.5

3.6

6.9

6.1

-

-

 SS1G_00606

MAPKK kinase (SsSTE11)

2.1

2.2

-

-

-

2.1

 SS1G_08085

AGC protein kinase (SsRIM15)

-

2.1

2

-

-

-

 SS1G_03455

HAL family protein kinase

-

-

-

-

3.3

3.7

 SS1G_06203

CAMK protein kinase (SsRCK2)

-

-

-

-

-

2.3

 SS1G_10021

CAMK protein kinase (SsCMK2)

-

-

-

-

-

4.1

 SS1G_06542

ran1-like protein kinase (SsSKS1)

-

-

-

-

-

2.3

 SS1G_09511

protein kinase (Ss-Other-03)

-

-

-

-

-

5.8

 SS1G_14212

Funk1 serine threonine-protein kinase

2.1

-

-

-

-

-

 SS1G_12423

Funk1 serine threonine-protein kinase

2.3

2.4

-

-

-

-

 SS1G_09355

Funk1 serine threonine-protein kinase

2.1

2.3

-

-

-

-

 SS1G_10091

two-component histidine protein kinase (SHK1)

2.6

-

-

-

-

-

2. Phosphatases

 SS1G_11340

tyrosine phosphatase

2.6

2.1

2.2

-

-

2

 SS1G_01711

protein phosphatase type 1 complex subunit hex2 reg1

3.3

3.2

2.2

-

-

-

 SS1G_04320

tyrosine-protein phosphatase non-receptor type partial

2.1

3.5

2.5

-

-

-

 SS1G_06382

protein phosphatase regulator

2.1

-

-

-

-

-

 SS1G_12383

histidine acid phosphatase

-

2.8

-

-

-

-

 SS1G_08513

serine threonine-protein phosphatase PP2A

-

-

-

-

-

2.8

 SS1G_10466

diketo-5-methylthio-1-phosphopentane phosphatase

-

-

-

-

-

2.5

3. GTPase/GTP-binding

 SS1G_03234

rho GTPase activator

3.1

5

4.6

4.8

-

-

 SS1G_06571

GTP-binding protein rho2

3.2

3

2.1

-

-

-

 SS1G_01564

nuclear GTP-binding protein NUG1

2.9

-

-

-

-

-

 SS1G_04075

ARF GTPase activator

-

-

-

-

-

2.5

 SS1G_10333

GTP-binding protein

-

-

-

-

-

2.3

 SS1G_08371

CLP1 GTPase

-

-

-

-

-

2.9

 SS1G_13589

phosphatidyl inositol phospholipase C (PL-PLC)

-

-

-

-

-

2.1

 SS1G_03548

phosphatidyl inositol phospholipase C (PL-PLC)

-

-

-

-

-

2.1

 SS1G_05073

phosphatidyl inositol phospholipase C (PL-PLC)

-

-

-

-

-

5

 SS1G_08747

phosphatidyl inositol phospholipase C (PL-PLC)

-

-

-

-

-

9

4. Other

 SS1G_06667

sir2 chromatin regulatory protein

2.1

3

2.6

2.1

-

-

 SS1G_06180

Pal1 morphogenesis-related protein

9.5

8.7

7.9

4.5

-

-

 SS1G_04402

Arrestin (chitin synthesis regulation)

-

-

-

-

2.1

-

 SS1G_03525

ankaryin repeat protein

-

-

-

-

2.7

-

 SS1G_04325

SUR7/Pal1 family (pH-response regulator)

-

-

-

-

-

2.2

 SS1G_10456

SUR7/Pal1 family (pH-response regulator)

-

-

-

-

-

12.6

 SS1G_09665

inositol-pentakisphosphate 2-kinase

-

-

-

-

-

2.8

 SS1G_00378

SRP19 signal recognition particle protein

-

-

-

-

-

3

 SS1G_08048

Sok1 cAMP-mediated signaling protein

-

-

-

-

-

2.7

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. More information about the genes can be found in Additional file 3: Table S3