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Table 8 Description and expression of up-regulated genes involved in fungal development

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

  

1

3

6

12

24

48

1. Reserve Mobilization

 SS1G_05192

acid trehalase

-

-

-

-

6.7

5.8

 SS1G_01494

1,3-alpha-glucanase/mutanase

-

-

-

-

-

30.7

 SS1G_09861

1,3-alpha-glucanase/mutanase

-

-

-

-

-

15

2. Cell Wall

  2.1 Turnover

  SS1G_05454

chitinase

-

-

2.4

-

3.5

2.7

  SS1G_11700

chitinase

-

-

-

-

3.7

69.1

  SS1G_05897

chitinase

-

-

-

-

3

2.6

  SS1G_11304

chitinase

-

-

-

-

-

4.8

  SS1G_08695

class III chitinase

-

-

-

5.8

8.2

11.7

  SS1G_11212

class III chitinase

-

-

-

-

-

9.3

  SS1G_12510

class V chitinase

-

-

-

-

11.2

66.9

  SS1G_09403

alpha-N-acetylglucosaminidase

-

-

-

-

2.9

-

  SS1G_12837

beta-N-acetylglucosaminidase

-

-

-

-

2.3

-

  SS1G_10038

beta-N-acetylglucosaminidase

-

-

-

-

-

3

  SS1G_04898

polysaccharide (chitin) deacetylase

-

-

15.2

-

-

12.7

  SS1G_01131

polysaccharide (chitin) deacetylase

-

-

-

-

3

3.6

  SS1G_00642

polysaccharide (chitin) deacetylase

-

-

-

-

-

8.3

  SS1G_12836

N-acetylglucosamine-6-phosphate deacetylase

-

-

-

-

-

6.7

  SS1G_01229

exo-beta 1,3 glucanase

-

-

-

-

3.4

22.8

  SS1G_09858

exo-beta 1,3 glucanase

-

-

-

-

-

2.8

  SS1G_12930

GPI-anchored cell wall beta-1,3-endoglucanase

8.5

6.4

3.9

-

-

2.2

  SS1G_04852

GPI-anchored cell wall beta-endoglucanase

2.1

-

-

-

-

-

2.2 Biosynthesis

 SS1G_04969

glycosyl transferase (cell wall synthesis)

2.2

-

-

-

-

-

 SS1G_04062

glycosyl transferase (cell wall synthesis)

-

3.6

3.8

-

-

-

 SS1G_07313

lipopolysaccharide biosynthesis protein

-

-

-

-

-

2.4

3. Other

 SS1G_02742

heterokaryon incompatibility protein

3.8

3.6

3.1

2.8

-

-

 SS1G_02744

heterokaryon incompatibility protein (SEC1)

3.7

5.5

-

5

3

3

 SS1G_02602

heterokaryon incompatibility protein

2.3

-

-

-

-

-

 SS1G_03889

heterokaryon incompatibility protein

-

3.2

-

-

-

-

 SS1G_11165

heterokaryon incompatibility protein

-

3.3

2.2

-

-

-

 SS1G_06800

heterokaryon incompatibility protein

-

3.6

-

-

-

-

 SS1G_08974

heterokaryon incompatibility protein (WD40 repeat)

-

-

-

-

2.7

-

 SS1G_06855

heterokaryon incompatibility protein

-

-

-

-

5.2

2.4

 SS1G_12973

heterokaryon incompatibility protein

-

-

-

-

-

2

 SS1G_09167

heterokaryon incompatibility protein

-

-

-

-

-

2.5

 SS1G_11315

heterokaryon incompatibility protein

-

-

-

-

-

4

 SS1G_07526

ferritin-like sexual development protein

3

2.5

2.5

-

-

23.9

 SS1G_04316

acyltransferase (hard surface induced)

2.5

-

-

-

-

-

 SS1G_10311

DUF cell surface protein (MAS2 orthologue)

-

2.1

-

2.5

-

-

 SS1G_11468

CAS1 appressorium specific protein (MAS3 orthologue)

-

-

2.9

7.3

12.9

10.5

 SS1G_14127

gamma-glutamyltranspeptidase (SsGGT1)

-

-

3.4

6.5

4.8

2.7

 SS1G_05330

gamma-glutamyltranspeptidase

-

-

-

-

2.1

-

 SS1G_12877

conidiation-specific expression protein

-

-

-

-

2.3

2.3

 SS1G_12133

predicted protein (SSP2)

-

-

-

-

4.7

9.6

 SS1G_07404

predicted protein (Ss-Rh1)

-

-

-

-

4.9

3.8

 SS1G_01614

G protein-coupled receptor (SOP1)

-

-

-

-

17.7

17.1

 SS1G_07626

Velvet family

-

-

-

-

-

5.2

 SS1G_13339

choline carnitine O-acyltransferase

-

-

-

-

-

3.4

 SS1G_02422

UDP-galactopyranose mutase (GLF)

-

-

-

-

-

3.9

 SS1G_10940

gamma-glutamyltranspeptidase

-

-

-

-

-

4

 SS1G_14065

predicted protein (SSP1)

-

-

-

-

-

47

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. More information about the genes can be found in Additional file 3: Table S3