COG classification | Â | Unique core genomes | |
---|---|---|---|
L. lactis core genome | L. lactis subsp. lactis | L. lactis subsp. cremoris | |
Translation, ribosomal structure and biogenesis | 10% | <1% | 5% |
Transcription | 8% | 11% | 9% |
Replication, recombination and repair | 6% | 3% | 6% |
Cell cycle control, cell division, chromosome partitioning | 1% | <1% | <1% |
Defence mechanisms | 1% | 4% | 3% |
Signal transduction mechanisms | 2% | 2% | 2% |
Cell wall/membrane/envelope biogenesis | 5% | 4% | 4% |
Cell motility | <1% | 1% | 1% |
Intracellular trafficking, secretion, and vesicular transport | 1% | <1% | 2% |
Posttranslational modification, protein turnover, chaperones | 4% | 1% | <1% |
Energy production and conversion | 4% | 4% | 3% |
Carbohydrate transport and metabolism | 7% | 14% | 10% |
Amino acid transport and metabolism | 9% | 15% | 5% |
Nucleotide transport and metabolism | 5% | 1% | 1% |
Coenzyme transport and metabolism | 4% | 2% | 2% |
Lipid transport and metabolism | 3% | 3% | 3% |
Inorganic ion transport and metabolism | 6% | 4% | 3% |
Secondary metabolites biosynthesis, transport and catabolism | 2% | 1% | 2% |
General function prediction only | 14% | 6% | 10% |
Function unknown | 10% | 23% | 27% |