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Table 1 Shortest inversion distance for each of the 8 groups of Pseudomonas aeruginosa

From: Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats

sG a

cG a

I n v d b

inversion c

l d

IR e

R d b

1

2

1

(10,52)

4.061

A(2)

0

2

1

1

(-52,-10)

4.061

A(2)

0

3

1

1

(-62,-10)

4.769

A(2)

0

4

1

1

(-65,-10)

5.699

A(2)

0

5

1

3

(-6,-6)

0.0597

B(0)

0

   

(64,64)

0.0068

B(0)

 
   

(-64,-7)

5.879

B(0)

 

6

5

7

(28,28)

0.0130

O(0)

3

   

(54,54)

0.0025

None

 
   

(22,22)

0.0032

None

 
   

(19,19)

0.0031

None

 
   

(14,14)

0.0021

None

 
   

(11,11)

0.0054

None

 
   

(8,8)

0.0074

None

 

7

1

0

None

N/A

N/A

1

8

1

0

None

N/A

N/A

4

  1. aColumn sG is the source scaffold group, Column cG is the closest scaffold group
  2. b I n v d indicates the inversion distance between sG and cG after eliminating other independent rearrangement events. R d indicates the distance of other independent rearrangement events
  3. cThe two numbers indicate the starting and ending block of the inversion in the source scaffold (sG). Rearrangement scenario is calculated from the source group to the closest group
  4. d l is the length (in mbp) of inversion of the core-genome segments
  5. eColumn IR lists which pair of inverted repeats (A, B or O) flanks the inversion. The numeric code: 0 indicates the respective IR was found only in the source group, 1 indicates the IR was found only in the closest group, 2 indicates the IR was found in both groups