sG
a
|
cG
a
|
I
n
v
d
b
|
inversion
c
|
l
d
|
IR
e
|
R
d
b
|
---|
1 | 2 | 1 | (10,52) | 4.061 | A(2) | 0 |
2 | 1 | 1 | (-52,-10) | 4.061 | A(2) | 0 |
3 | 1 | 1 | (-62,-10) | 4.769 | A(2) | 0 |
4 | 1 | 1 | (-65,-10) | 5.699 | A(2) | 0 |
5 | 1 | 3 | (-6,-6) | 0.0597 | B(0) | 0 |
 |  |  | (64,64) | 0.0068 | B(0) |  |
 |  |  | (-64,-7) | 5.879 | B(0) |  |
6 | 5 | 7 | (28,28) | 0.0130 | O(0) | 3 |
 |  |  | (54,54) | 0.0025 | None |  |
 |  |  | (22,22) | 0.0032 | None |  |
 |  |  | (19,19) | 0.0031 | None |  |
 |  |  | (14,14) | 0.0021 | None |  |
 |  |  | (11,11) | 0.0054 | None |  |
 |  |  | (8,8) | 0.0074 | None |  |
7 | 1 | 0 | None | N/A | N/A | 1 |
8 | 1 | 0 | None | N/A | N/A | 4 |
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aColumn sG is the source scaffold group, Column cG is the closest scaffold group
-
b
I
n
v
d
indicates the inversion distance between sG and cG after eliminating other independent rearrangement events. R
d
indicates the distance of other independent rearrangement events
-
cThe two numbers indicate the starting and ending block of the inversion in the source scaffold (sG). Rearrangement scenario is calculated from the source group to the closest group
-
d
l is the length (in mbp) of inversion of the core-genome segments
-
eColumn IR lists which pair of inverted repeats (A, B or O) flanks the inversion. The numeric code: 0 indicates the respective IR was found only in the source group, 1 indicates the IR was found only in the closest group, 2 indicates the IR was found in both groups