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Fig. 3 | BMC Genomics

Fig. 3

From: Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

Fig. 3

Detection of a 122 kb gold standard deletion on chromosome 19p by 17 arrays. Horizontal axis shows position along chromosome 19. Vertical axes show log R ratio of fluorescence of NA12878 DNA over fluorescence of reference DNA. Grey dots indicate probes that have not been called as part of a CNV. Red dots indicate probes that have been called as part of a CNV. Horizontal lines indicate Nexus cutoffs for low and high copy deletions (red) and duplications (blue). Gray dashed box indicates CNV region. Genes and segmental duplications (SegDups) are also shown. 1. Affymetrix SNP6.0, 2. Affymetrix CytoScanHD, 3. Agilent 1×1M-CGH, 4. Agilent 1×1M-HR, 5. Agilent 2×400K-CGH, 6. Agilent 2×400K-CNV, 7. Agilent 4×180K-CGH, 8. Illumina HumanOmni5Exome, 9. Illumina HumanOmni5, 10. Illumina HumanOmni2.5Exome, 11. Illumina HumanOmni2.5, 12. Illumina HumanOmni1Quad, 13. Illumina HumanOmniExpressExome, 14. Illumina HumanOmniExpress, 15. Illumina CoreExome, 16. Illumina CytoSNP-850, 17. Illumina Psych Array

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