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Table 4 Genes in significant GO terms within LD block on LG02

From: Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

Gene

Starting base

Gene description

GAMO_00059458

18475327

zgc:112234: Histone H2B 1/2 (Danio rerio)

GAMO_00059459

18476591

Histone H2A (Oncorhynchus mykiss)

GAMO_00059461

18489582

TGas006m08.1: Histone H4 (Xenopus tropicalis)

GAMO_00059462

18491420

Histone H2A (Oncorhynchus mykiss)

GAMO_00059465

18506398

Histone H2A (Oncorhynchus mykiss)

GAMO_00059556

19188916

STRA13: Centromere protein X (Homo sapiens)

GAMO_00059593

19396062

Crebbp: CREB-binding protein (Rattus norvegicus)

GAMO_00059696

20010135

NMT1: Glycylpeptide N-tetradecanoyltransferase 1 (Homo sapiens)

GAMO_00059920

21260662

Coro1b: Coronin-1B (Mus musculus)

GAMO_00059924

21287842

suv420h2: Histone-lysine N-methyltransferase SUV420H2 (Xenopus laevis)

GAMO_00059998

21707418

KCNA1: Potassium voltage-gated channel subfamily A member 1 (Homo sapiens)

GAMO_00060305

23130440

tmem11: Transmembrane protein 11%2C mitochondrial (Danio rerio)

GAMO_00060314

23170545

Histone H2A (Oncorhynchus mykiss)

GAMO_00060318

23177224

Histone H2A (Oncorhynchus mykiss)

GAMO_00060319

23198635

Histone H3 (Urechis caupo)

GAMO_00060320

23199855

Histone H2A (Oncorhynchus mykiss)

GAMO_00060321

23201514

TGas006m08.1: Histone H4 (Xenopus tropicalis)

GAMO_00060322

23202645

Histone H3 (Urechis caupo)

GAMO_00060324

23204017

Histone H2B (Salmo trutta)

GAMO_00060364

23359510

Pigq: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q (Mus musculus)

GAMO_00060373

23393752

Histone H2A (Oncorhynchus mykiss)

GAMO_00060375

23400842

TGas006m08.1: Histone H4 (Xenopus tropicalis)

GAMO_00060376

23401993

Histone H3 (Urechis caupo)

GAMO_00060390

23480761

HDAC9: Histone deacetylase 9 (Homo sapiens)

GAMO_00060462

23855114

APOL3: Apolipoprotein L3 (Homo sapiens)

GAMO_00060465

23866729

APOL3: Apolipoprotein L3 (Homo sapiens)

GAMO_00060467

23891523

APOL3: Apolipoprotein L3 (Homo sapiens)

  1. While several GO terms were significantly enriched, many of them collapsed to the same set of DNA structural genes, including several genes encoding all four major histone proteins that make up the nucleosome