Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

BMC Genomics

Table 5 GO enrichment analysis of linkage disequilibrium block on LG07

GO.ID	Term	Annotated	Significant	Fisher pval	p-adj (fdr)
GO:0006855	drug transmembrane transport	5	2	0.0014	1
GO:0006066	alcohol metabolic process	24	3	0.0028	1
GO:0015893	drug transport	8	2	0.0038	1
GO:0042493	response to drug	8	2	0.0038	1
GO:0044765	single-organism transport	1098	23	0.0044	1
GO:0023051	regulation of signalling	275	9	0.0054	1
GO:1902578	single-organism localization	1118	23	0.0055	1
GO:1901615	organic hydroxy compound metabolic process	31	3	0.0058	1
GO:0006071	glycerol metabolic process	10	2	0.0059	1
GO:0019400	alditol metabolic process	10	2	0.0059	1

Using topGO, (in R), enrichment analysis shows multiple GO categories that may be enriched in the LD block from LG07, including genes involved with signal transport and metabolic processes. Total number of annotated genes in each GO category is shown, as well as those within the LD block that are significant (Fisher test p < 0.01). Multiple-test correction (calculated as false-discovery rate, ‘fdr’) is shown in p-adj column

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