Table 7 Comparison of genome contents and population divergence of cod chromosome linkage groups 2, 7 and 12
Group | # SNPs | Block length (Mb) | SNP linked | # genes | Genes in LD | SNP density | proportion exonic SNPs | Fst in LD block | FST vs LD | FST outside LD block | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|
LG02 | 43,341 | 5.6 | 33 | 1095 | 294 | 7.72E-03 | 0.089 | 0.098 | negative | 0.0025 | discontinuous block |
LG07 | 77,751 | 9.3 | 54 | 1166 | 306 | 8.36E-03 | 0.064 | 0.089 | positive | 0.0004 | Â |
LG12 | 61,251 | 11.6 | 17 | 975 | 437 | 5.29E-03 | 0.071 | 0.173 | higly positive | 0.0022 | marked lack of SNPs adjacent to linkage block |
Not 2, 7, or 12 | 2,792,388 | 493.2 | Â | Â | Â | Â | Â | Â | Â | Â | Â |