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Table 2 The abundance of conserved and known miRNAs family in cucumber tissues

From: Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

 

Lines 9930

hardwickii

Roots

Stems

Leaves

Roots

Stems

Leaves

Conserved miRNA

 miR156

41157.79

17310.32

34671.86

69197.32

26787.81

55323.58

 miR159

245.42

267.45

440.81

170.31

177.06

267.73

 miR160

627.02

405.39

274.5

43.93

49.12

55.23

 miR162

135.23

32.1

15.43

130.26

35.35

46.20

 miR164

918.65

1323.1

76.88

289.72

800.64

285.01

 miR166

5334.08

12579.6

14272.63

15591.71

52495.52

62135.22

 miR167

18016.33

4690.6

12650

3119.19

2667.24

16258.88

 miR168

2306.63

3177.99

1745.72

5488.06

7501.65

5942.70

 miR169

358.34

90.92

74.25

28.28

297.74

260.28

 miR171

64.47

55.52

84.86

44.12

73.44

186.50

 miR172

958.22

533.97

757.13

182.34

905.20

1639.42

 miR319

24.04

79.79

0.96

26.90

70.15

1.68

 miR390

149.46

139.54

40.5

7.16

71.46

87.82

 miR393

2.67

5.14

23.32

3.48

3.72

10.27

 miR394

1.15

10.19

16.21

3.20

22.53

30.66

 miR395

11.91

0.25

0.08

1.12

0.06

0.08

 miR396

563.33

188.83

704.53

88.43

179.79

633.29

 miR397

0.57

53.17

75.22

7.25

0.03

0.09

 miR398

0.07

27.89

67.94

2.04

0.34

0.07

 miR399

18.12

599.61

211.9

45.82

100.41

80.46

 miR408

33.50

60.58

123.61

48.92

0.06

0.23

 miR827

31.98

539.2

601.69

42.61

3.11

10.36

 miR1515

1.08

8.76

11.04

6.74

3.28

10.83

Known miRNA

 miR157

13362.55

35645.71

125371.8

10349.34

17252.43

64147.90

 miR2111

31.40

66.98

11.22

23.62

76.54

22.22

 miR2911

7415.80

828.56

951.76

681.09

79.65

9.76

 miR2916

3.46

15.84

15.07

141.81

42.53

70.68

 miR2950

235.09

42.71

1.86

4.80

20.24

4.42

 miR4414

0.00

389.65

3.28

0.00

221.73

117.57

 miR530

8.30

50.72

7.27

24.32

53.19

154.16

 miR858

0.02

0.04

0.02

0.01

0.12

0.24

  1. The RPM (reads per million reads) value was used to represent the expression levels of cucumber miRNA