Skip to main content

Table 1 Top 10 over-represented KEGG pathways associated with the non-expressed (upper panel) and expressed (lower panel) genes in this time series and their associated p-values. The IE rank column gives the rank of the pathway in an overrepresentation analysis of respectively non-expressed and expressed genes in a study on individual non-fertilized zebrafish eggs [23]

From: Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos

 

p-value

IE rank

Non expressed associated KEGG-Term

Neuroactive ligand-receptor interaction

1.36E-38

1

Calcium signaling pathway

9.63E-17

2

Cytokine-cytokine receptor interaction

6.52E-09

4

Cell adhesion molecules (CAMs)

1.17E-05

3

ECM-receptor interaction

8.75E-04

6

MAPK signaling pathway

9.34E-04

8

Chondroitin sulfate biosynthesis

1.39E-03

-

Phosphatidylinositol signaling system

1.58E-03

-

GnRH signaling pathway

4.35E-03

11

Toll-like receptor signaling pathway

4.44E-03

14

Expressed associated KEGG-Term

Spliceosome

3.83E-26

2

Ribosome

2.87E-25

1

Cell cycle

2.84E-10

11

Oxidative phosphorylation

2.07E-09

4

Proteasome

7.45E-07

17

DNA replication

8.68E-06

10

Ubiquitin mediated proteolysis

3.21E-05

3

RNA degradation

5.37E-05

5

Pyrimidine metabolism

1.43E-04

13

Nucleotide excision repair

3.24E-04

8