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Table 2 Summary of sequences analysis and RNA-Seq data

From: Transcriptomic profiling of two Pak Choi varieties with contrasting anthocyanin contents provides an insight into structural and regulatory genes in anthocyanin biosynthetic pathway

Sample name Green-leafed variety ‘G’ Purple-leafed variety ‘P’
Raw reads 172,380,454 168,368,500
Clean reads 165,289,336 161,562,282
Clean bases 24.79G 24.24G
Error rate (%) 0.01 0.01
Q20 (%) 97.97 98.01
Q30 (%) 94.95 94.99
GC content (%) 48.03 47.91
Total mapped 111,825,953 (67.63%) 112,860,042 (69.89%)
Multiple mapped 2,211,063 (1.33%) 2,111,248 (1.33%)
Uniquely mapped 109,614,890 (66.30%) 110,748,794 (68.57%)
Reads map to ‘ + ’ 54,945,243 (33.24%) 55,565,180 (34.40%)
Reads map to ‘-’ 54,669,647 (33.07%) 55,183,614 (34.16%)
Non-splice reads 63,472,079 (38.40%) 65,056,741 (40.27%)
Splice reads 46,142,811 (27.90%) 45,692,053 (28,29%)
  1. Q20: The percentage of bases with a Phred value >20
  2. Q30: The percentage of bases with a Phred value >30