Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress

Table 1 Bisulfite sequencing summary

Samples	Total reads	Mapped reads	Mapping rate (%)	^mC percent (%)	^mCG percent (%)	^mCHG percent (%)	^mCHH percent (%)
CK	349,288,166	228,002,142	65.28	201,543,688 (100)	47,879,971 (23.76)	45,874,296 (22.76)	107,789,421 (53.48)
D	379,630,307	256,948,717	67.68	232,876,499 (100)	50,588,873 (21.72)	48,445,561 (20.80)	13,3842,065 (57.47)
Re_W	376,067,028	253,873,809	67.51	215,698,912 (100)	49,367,000 (22.89)	47,336,957 (21.95)	118,994,955 (55.17)

Total reads are the clean sequencing reads after the data filtration. Mapping rate are the reads with unique positions on reference genome after alignments. ^mC, ^mCG, ^mCHG, ^mCHH percent (%) are the percentages of methylated ^mC in each context in all methylated cytosines from the whole genome