Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress

Table 2 Statistical results of methylated cytosines in different contexts

Samples	Duplication rate (%)	^mC percent (%)	^mCpG percent (%)	^mCHG percent (%)	^mCHH percent (%)
CK	10.70	27.99%	58.42%	53.77%	19.50%
D	12.48	32.34%	61.71%	56.78%	24.21%
Re_W	12.24	29.95%	60.22%	55.48%	21.52%

Duplication rate is the percentage of repetitive sequences in all clean sequencing reads. ^mC percent (%) is the percentage of methylated cytosines in all cytosines from the whole genome. ^mCG, ^mCHG, ^mCHH percent (%) are the percentages of methylated ^mCG, ^mCHG, ^mCHH in all corresponding cytosines context (C, CG, CHG, CHH and H represents A, C, T) in genome, respectively

ISSN: 1471-2164