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Table 1 Illumina NextSeq500 read processing and mapping results from RNA-seq mountain pine beetle libraries

From: Comparative transcriptomics of mountain pine beetle pheromone-biosynthetic tissues and functional analysis of CYP6DE3

Sample ID Sample description Biological replicate Index 1 Index 2 Total read pairs Processed read pairs Aligned Unique counts
MFF1 Adult fed female midgut/fat body 1 TCCGGAGA AGGCTATA 32908461 32869809 25376605 20575844
MFF2 Adult fed female midgut/fat body 2 TCCGGAGA GCCTCTAT 33943439 33904830 22563448 18078917
MFF3 Adult fed female midgut/fat body 3 TCCGGAGA AGGATAGG 24984038 24959212 18972883 15336322
MFF4 Adult fed female midgut/fat body 4 TCCGGAGA TCAGAGCC 32866187 32828407 21804076 17105387
MFM1 Adult fed male midgut/fat body 1 TCCGGAGA CTTCGCCT 33881743 33839530 23694857 18773687
MFM2 Adult fed male midgut/fat body 2 TCCGGAGA TAAGATTA 30640838 30616043 23809219 19162578
MFM3 Adult fed male midgut/fat body 3 TCCGGAGA ACGTCCTG 29838624 29814207 21278225 17167448
MFM4 Adult fed male midgut/fat body 4 TCCGGAGA GTCAGTAC 22832064 22820560 17562596 14236426
MUF1 Adult unfed female midgut/fat body 1 ATTACTCG AGGCTATA 20441625 20422181 16173705 12413351
MUF2 Adult unfed female midgut/fat body 2 ATTACTCG GCCTCTAT 21174699 21158515 17072234 12896359
MUF3 Adult unfed female midgut/fat body 3 ATTACTCG AGGATAGG 20730531 20708211 16352452 12801594
MUF4 Adult unfed female midgut/fat body 4 ATTACTCG TCAGAGCC 18659429 18650081 14552744 11262799
MUM1 Adult unfed male midgut/fat body 1 ATTACTCG CTTCGCCT 24886800 24858754 19023568 14522591
MUM2 Adult unfed male midgut/fat body 2 ATTACTCG TAAGATTA 28619496 28592550 22067707 16663228
MUM3 Adult unfed male midgut/fat body 3 ATTACTCG ACGTCCTG 21795275 21769632 17025197 13146374
MUM4 Adult unfed male midgut/fat body 4 ATTACTCG GTCAGTAC 26573408 26542803 20615412 15717687
  All libraries     424776657 424355325 317944928 249860592