Fig. 9

Distance between predicted genes and transposable element (TE)-like features of Venturia inaequalis Vi1. Flanking distances (3′ and 5′) to TE-like features for all predicted genes are represented in the underlying heat map, with the number of genes in each bin shown as a colour-coded heat map on orthogonal projection (generated as in Saunders et al. [185]). Genes were sorted into two dimensional bins on the basis of the lengths of flanking distances. a 423 Core Eukaryotic Genes (white dots) are similar to all genes in that they are not closely associated with TE-like features; whereas b Venturia infection secretome (VIS) gene set, plus AvrLm6- and Ave1-like genes (coloured dots: dark pink = SSPs with two or more cysteines (≤500 amino acid); light pink = SSPs with one or no cysteines or less (≤500 amino acids); blue = enzymes (peptidases/redox/primary metabolism); dark green = CAZymes; light green = putative cell wall-degrading enzymes (non-CAZyme); white = cell wall associated and miscellaneous proteins >500 amino acids in length). Note that the axes are not linear. Genes at the scaffold end were excluded from this analysis