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Table 3 Genome-wide identification of the DR-II type selective sweep regions with low diversity (π ≤ 0.0002) within cultivars, but high diversity (π >0.001) in wild rice

From: Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars

  Chr Rang of blocks Length
(bp)
π Jap
*105
π Ind
*105
D Jap-Ind
*105
π Cultivar
*105
π Wild
*105
D Jap-Wild
*105
D Ind-Wild
*105
D Cul-Wild
*105
1 chr01 8645929–8660126 14198 1 18 16 13 118 104 108 106
2 chr03 26199939–26210003 10065 10 15 14 13 141 140 144 142
3 chr04 25959995–26040007 80013 10 15 14 13 181 228 229 229
4 chr04 26089892–26100078 10187 6 8 7 7 155 250 249 249
5 chr04 26229998–26260103 30106 10 15 15 14 230 327 325 326
6 chr04 26359991–26370003 10013 5 6 6 6 125 168 166 167
7 chr04 26789966–26810053 20088 10 16 14 14 155 251 247 249
8 chr04 26949945–26970083 20139 9 14 13 12 141 191 190 190
9 chr04 27009995–27060009 50015 7 20 17 16 286 360 356 358
10 chr04 32529159–32540000 10842 18 13 16 16 109 104 123 114
11 chr04 33889971–33900005 10035 15 10 20 16 173 228 222 225
12 chr04 33979989–33990038 10050 15 10 16 14 100 135 145 140
13 chr04 34219891–34249999 30109 12 7 12 11 277 316 319 318
14 chr05 29729953–29740204 10252 9 5 7 7 115 115 103 109
15 chr07 2739991–2770008 30018 15 13 18 16 406 456 451 453
16 chr07 2799992–2810002 10011 11 6 9 9 262 311 305 308
17 chr07 2879923–2910069 30147 14 10 13 13 280 437 432 434
18 chr07 2979996–2991842 11847 1 4 3 3 140 104 105 105
19 chr07 3096102–3109999 13898 10 9 11 10 110 116 108 112
20 chr07 3699995–3710053 10059 12 7 10 10 364 394 396 395
21 chr07 3759873–3790006 30134 9 7 10 9 264 273 272 273
22 chr07 4019981–4030093 10113 12 6 12 10 138 131 124 127
23 chr07 4070000–4090006 20007 9 17 15 14 236 256 252 254
24 chr08 23749999–23770091 20093 12 14 14 14 246 269 263 266
25 chr08 23809970–23860036 50067 9 16 15 14 549 500 501 501
26 chr08 23919999–23940003 20005 5 10 9 8 206 283 282 283
27 chr08 23989975–24040080 50106 7 14 11 11 273 315 312 313
28 chr12 24930000–24950016 20017 13 1 11 9 168 124 121 122
Average 22951 10 11 12 11 213 247 246 246