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Table 1 Mean values and standard deviation of GC, GC1, GC2, GC12, GC3, GC3s, GRVAY, Aromo, ENC and CAI values for reconstructed genes in T.multiceps

From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

Class Genes Codons GC (%) GC1 (%) GC2 (%) GC12 (%) GC3 (%) GC3s (%) Gravy Aromo ENC CAI
Ribosome genes 15 5731 48.17 ± 3.38 54.62 ± 4.63 39.77 ± 4.11 47.19 ± 3.50 50.16 ± 5.10 48.55 ± 5.25 −0.54 ± 0.30 0.08 ± 0.03 57.39 ± 2.15 0.23 ± 0.03
Other genes 8605 2807063 49.27 ± 3.78 55.36 ± 4.79 41.01 ± 5.44 48.16 ± 3.98 51.43 ± 6.72 49.80 ± 6.83 −0.25 ± 0.39 0.08 ± 0.03 56.68 ± 3.41 0.23 ± 0.03
All genes 8620 2812794 49.27 ± 3.78 55.36 ± 4.79 41.01 ± 5.44 48.18 ± 3.98 51.43 ± 6.72 49.80 ± 6.83 −0.25 ± 0.39 0.08 ± 0.03 56.68 ± 3.41 0.23 ± 0.03
  1. Note: G, guanine; C, cytosine; GC1, GC2, GC12 and GC3, GC content at the first, second, the average of GC1 and GC2 and third codon positions; GRAVY, grand average of hydropathicity; Aromo, aromaticity; ENc, effective number of codons; CAI, codon adaptation index