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Table 1 Mean values and standard deviation of GC, GC1, GC2, GC12, GC3, GC3s, GRVAY, Aromo, ENC and CAI values for reconstructed genes in T.multiceps

From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

Class

Genes

Codons

GC (%)

GC1 (%)

GC2 (%)

GC12 (%)

GC3 (%)

GC3s (%)

Gravy

Aromo

ENC

CAI

Ribosome genes

15

5731

48.17 ± 3.38

54.62 ± 4.63

39.77 ± 4.11

47.19 ± 3.50

50.16 ± 5.10

48.55 ± 5.25

−0.54 ± 0.30

0.08 ± 0.03

57.39 ± 2.15

0.23 ± 0.03

Other genes

8605

2807063

49.27 ± 3.78

55.36 ± 4.79

41.01 ± 5.44

48.16 ± 3.98

51.43 ± 6.72

49.80 ± 6.83

−0.25 ± 0.39

0.08 ± 0.03

56.68 ± 3.41

0.23 ± 0.03

All genes

8620

2812794

49.27 ± 3.78

55.36 ± 4.79

41.01 ± 5.44

48.18 ± 3.98

51.43 ± 6.72

49.80 ± 6.83

−0.25 ± 0.39

0.08 ± 0.03

56.68 ± 3.41

0.23 ± 0.03

  1. Note: G, guanine; C, cytosine; GC1, GC2, GC12 and GC3, GC content at the first, second, the average of GC1 and GC2 and third codon positions; GRAVY, grand average of hydropathicity; Aromo, aromaticity; ENc, effective number of codons; CAI, codon adaptation index