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Table 3 Correlation coefficients between the positions of genes along the PC1, PC2 and the index of codon usage and synonymous codon usage bias among the total number of genes analyzed

From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

 

Length

GC

GC1

GC2

GC3

GC3s

A3s

T3s

G3s

C3s

Gravy

Aromo

CAI

FOP

ENc

PC1

Length

                

GC

.064**

               

GC1

.090**

.663**

              

GC2

−0.007

.605**

.207**

             

GC3

.050**

.724**

.239**

.063**

            

GC3s

.055**

.738**

.264**

.076**

.995**

           

A3s

-.063**

-.655**

-.280**

-.220**

-.728**

-.732**

          

T3s

−0.016

-.613**

-.166**

-.136**

-.805**

-.808**

.264**

         

G3s

.059**

.303**

.207**

-.249**

.564**

.570**

-.312**

-.409**

        

C3s

.026*

.535**

.072**

.061**

.802**

.801**

-.592**

-.655**

.033**

       

Gravy

-.047**

−0.009

-.209**

−0.007

.140**

.121**

-.319**

-.110**

-.278**

.242**

      

Aromo

-.099**

-.265**

-.486**

-.225**

.080**

.041**

-.076**

0.015

-.185**

.265**

.440**

     

CAI

.074**

.210**

.124**

-.045**

.302**

.306**

-.377**

0.002

.070**

.415**

-.075**

.055**

    

FOP

.056**

.397**

.141**

.177**

.426**

.431**

-.445**

-.227**

-.034**

.564**

.007

.035**

-.769**

   

ENc

0.017

-.217**

-.125**

-.043**

-.243**

-.249**

.337**

.057**

-.063**

-.246**

-.039**

0.021

-.310**

-.254**

  

PC1

-.073**

-.693**

-.273**

-.142**

-.859**

-.865**

.643**

.704**

-.413**

-.749**

-.083**

-.026*

-.321**

-.433**

.230**

 

PC2

-.092**

-.062**

-.127**

-.078**

.048**

.040**

.444**

-.438**

.249**

-.108**

-.070**

0.008

-.358**

-.352**

.204**

0

  1. Note: ** P < 0.01. * P < 0.05