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Table 3 Correlation coefficients between the positions of genes along the PC1, PC2 and the index of codon usage and synonymous codon usage bias among the total number of genes analyzed

From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

  Length GC GC1 GC2 GC3 GC3s A3s T3s G3s C3s Gravy Aromo CAI FOP ENc PC1
Length                 
GC .064**                
GC1 .090** .663**               
GC2 −0.007 .605** .207**              
GC3 .050** .724** .239** .063**             
GC3s .055** .738** .264** .076** .995**            
A3s -.063** -.655** -.280** -.220** -.728** -.732**           
T3s −0.016 -.613** -.166** -.136** -.805** -.808** .264**          
G3s .059** .303** .207** -.249** .564** .570** -.312** -.409**         
C3s .026* .535** .072** .061** .802** .801** -.592** -.655** .033**        
Gravy -.047** −0.009 -.209** −0.007 .140** .121** -.319** -.110** -.278** .242**       
Aromo -.099** -.265** -.486** -.225** .080** .041** -.076** 0.015 -.185** .265** .440**      
CAI .074** .210** .124** -.045** .302** .306** -.377** 0.002 .070** .415** -.075** .055**     
FOP .056** .397** .141** .177** .426** .431** -.445** -.227** -.034** .564** .007 .035** -.769**    
ENc 0.017 -.217** -.125** -.043** -.243** -.249** .337** .057** -.063** -.246** -.039** 0.021 -.310** -.254**   
PC1 -.073** -.693** -.273** -.142** -.859** -.865** .643** .704** -.413** -.749** -.083** -.026* -.321** -.433** .230**  
PC2 -.092** -.062** -.127** -.078** .048** .040** .444** -.438** .249** -.108** -.070** 0.008 -.358** -.352** .204** 0
  1. Note: ** P < 0.01. * P < 0.05