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Table 1 ABC transporters identified in the B. tabaci Q genome

From: Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci

Subfamily

Gene ID

Length (aa)

Location (strand)

Exon

Topology (SMART)

Matched gene (Accession no.)

N-Glca

O-Glcb

CDS statusc

ABCA

Btabq017043.1

1655

Scaffold_3468:1006:32679+

20

TMD-NBD-TMD-NBD

ABCA3 (AIN44094.1)

10

7

C

Btabq003223.3

1387

Scaffold_13:22456:46016-

18

TMD-NBD-TMD-NBD

ABCA3 (XP_008199154.1)

7

12

C

Btabq003232.1

1710

Scaffold_13:231650:263916+

22

TMD-NBD-TMD-NBD

ABCA3 (XP_008580143.1)

13

13

C

Btabq009375.1

1607

Scaffold_204:588616:628011+

24

TMD-NBD-TMD-NBD

ABCA3 (XP_004627914.1)

11

11

C

Btabq009376.1

1642

Scaffold_204:635079:664477:-

24

TMD-NBD-TMD-NBD

ABCA3 (XP_007499572.1)

6

14

C

Btabq022409.1

1642

Scaffold_499:371203:397123:+

23

TMD-NBD-TMD-NBD

ABCA3 (XP_007499572.2)

6

16

C

Btabq022410.1

1653

Scaffold_499:405484:424414:-

21

TMD-NBD-TMD-NBD

ABCA3 (XP_007499572.3)

11

15

C

Btabq008198.1

1730

Scaffold_188:144605:225978+

25

TMD-NBD-TMD-NBD

ABCA5 (XP_015513231.1)

11

25

C

ABCB

Btabq001304.1

837

Scaffold_11:1763748:1779600:-

13

TMD-NBD

ABCB6 (KDR08849.1)

5

0

C

Btabq028971.1

684

Scaffold_89:122752:135916:+

13

TMD-NBD

ABCB7 (XP003707011.1)

3

12

C

Btabq013065.1

903

Scaffold_266:334207:358911:-

19

TMD-NBD

ABCB8 (KDR20884.1)

2

8

C

ABCC

Btabq000311.1

1543

Scaffold_102:620714:659592:+

28

TMD-NBD-TMD-NBD

ABCC1 (XP_012252456.1)

8

10

C

Btabq019529.2

1457

Scaffold_400:253922:298887:+

30

TMD-NBD-TMD-NBD

ABCC1 (KYM99989.1)

11

5

C

Btabq026695.3

1422

Scaffold_728:117063:145027:+

27

TMD-NBD-TMD-NBD

ABCC4 (XP_003487856.1)

8

11

C

Btabq008004.1

1302

Scaffold_1847:75114:101542:-

21

TMD-NBD-TMD-NBD

ABCC4 (XP_015366071.1)

11

4

C

Btabq004618.1

1527

Scaffold_1440:62283:85796:-

24

TMD-NBD-TMD-NBD

ABCC7 (KDR17053.1)

11

3

C

Btabq003933.1

1558

Scaffold_137:590708:610342:+

25

TMD-NBD-TMD-NBD

ABCC9 (XP_012225332.1)

9

3

C

ABCD

Btabq026746.1

733

Scaffold_732:28889:99259:+

4

TMD-NBD

ABCD2 (AIN44106.1)

3

5

C

Btabq017051.1

670

Scaffold_347:310155:194947:-

15

TMD-NBD

ABCD3 (XP_008186233.1)

4

9

C

ABCE

BtabqABCE1

608

Scaffold_2889:666:11372:+

10

NBD-NBD

ABCE1 (XP_014275278.1)

1

5

C

ABCF

Btabq009873.1

595

Scaffold_2118:27608:29395:+

1

NBD-NBD

ABCF1 (XP_971562.1)

5

0

C

Btabq014578.1

626

Scaffold_354:220262:229341:+

10

NBD-NBD

ABCF2 (XP_966990.1)

4

2

C

Btabq016264.1

746

Scaffold_3286:21844:40980:-

13

NBD-NBD

ABCF3 (KDR22359.1)

3

5

C

ABCG

Btabq003568.1

679

Scaffold_133:520218:533101:-

14

NBD-TMD

ABCG1 (KDR13078.1)

6

0

C

Btabq006006.1

634

Scaffold_1598:84277:126599:+

11

NBD-TMD

ABCG1 (XP_001943523.1)

1

4

C

Btabq007377.1

594

Scaffold_176:564047:611847:-

11

NBD-TMD

ABCG1 (XP_001947776.2)

1

10

C

Btabq020594.1

703

Scaffold_434:86892:119931:-

14

NBD-TMD

ABCG1 (XP_001942514.1)

1

6

C

Btabq029952.1

654

Scaffold_973:236:11383:+

9

NBD-TMD

ABCG1 (KDR12258.1)

1

6

C

Btabq009742.1

300

Scaffold_434:92701:149213:-

6

NBD

ABCG1 (XP_008476671.1)

1

3

P

Btabq029281.1

676

Scaffold_910:266071:279898:-

12

NBD-TMD

ABCG4 (XP_003246360.1)

6

0

C

Btabq007131.3

649

Scaffold_1729:110948:148435:+

13

NBD-TMD

ABCG4 (XP_008472465.1)

2

4

C

Btabq023008.1

590

Scaffold_523:150957:167280:-

11

NBD-TMD

ABCG4 (XP_003246361.1)

2

6

C

Btabq009608.1

590

Scaffold_208:388361:402826:-

10

NBD-TMD

ABCG4 (XP_003246361.1)

2

6

C

Btabq009611.1

590

Scaffold_208:557522:571601:+

11

NBD-TMD

ABCG4 (XP_003246361.1)

2

6

C

Btabq023919.1

639

Scaffold_563:13213:51650:-

10

NBD-TMD

ABCG4 (XP_008470161.1)

3

9

C

Btabq013894.1

590

Scaffold_282:256960:283064:+

11

NBD-TMD

ABCG4 (XP_003246361.1)

2

6

C

Btabq000844.1

655

Scaffold_1057:77963:94241:+

10

NBD-TMD

ABCG4 (XP_015509620.1)

2

0

C

Btabq026080.1

692

Scaffold_683:129726:137969:+

3

NBD-TMD

ABCG4 (KDR08336.1)

6

11

C

Btabq020567.1

692

Scaffold_4326:21216:33527:+

4

NBD-TMD

ABCG4 (KDR08336.1)

6

11

C

Btabq001288.1

612

Scaffold_11:1463363:1478800:-

10

NBD-TMD

ABCG5 (KDR20187.1)

2

19

C

Btabq001290.1

952

Scaffold_11:1493109:1530869:+

15

TMD

ABCG8 (XP_001944045.2)

4

19

P

Btabq023890.1

755

Scaffold_561:73328:85538:-

15

NBD-TMD

ABCG14 (XP_014258500.1)

3

1

C

Btabq014028.1

607

Scaffold_2842:67736:80804:+

12

NBD-TMD

Scarlet (XP_014276471.1)

3

11

C

Btabq015484.1

645

Scaffold_3117:65588:78996:+

14

NBD-TMD

Scarlet (XP_014279356.1)

5

9

C

Btabq002474.1

667

Scaffold_121:146665:158695:-

11

NBD-TMD

Scarlet (NP_001306193.1)

3

6

C

Btabq022510.1

700

Scaffold_50:595327:617912:+

13

NBD-TMD

White (KDR20987.1)

3

8

C

ABCH

Btabq015123.1

685

Scaffold_304:505925:535800:-

15

NBD-TMD

ABCG23 (XP_001945365.2)

6

2

C

Btabq003158.1

627

Scaffold_129:187020:214919:-

14

NBD-TMD

ABCG23 (XP_001945365.2)

4

1

C

Btabq006712.2

687

Scaffold_167:585953:624494:-

16

NBD-TMD

ABCG23 (XP_001945365.2)

6

2

C

Btabq018898.1

679

Scaffold_386:127646:145952:-

15

NBD-TMD

ABCG23 (XP_001945365.2)

4

6

C

Btabq019352.1

685

Scaffold_398:364203:394966:+

15

NBD-TMD

ABCG23 (XP_015364832.1)

6

2

C

Btabq026264.1

647

Scaffold_7:597935:614293:-

14

NBD-TMD

ABCG23 (XP_001942931.1)

5

1

C

Btabq028063.1

749

Scaffold_82:494722:529828:-

16

NBD-TMD

ABCG23 (XP_001945213.1)

6

11

C

Btabq009745.1

695

Scaffold_21:1506328:1537013:-

12

NBD-TMD

ABCG20 (XP_014289229.1)

5

3

C

BTA027409.1

764

Scaffold_791:944:21302:+

16

NBD-TMD

ABCG20 (XP_001951744.1)

6

8

C

  1. aN-glycosylation sites were predicted using the NetNGlyc 1.0 server (http://www.cbs.dtu.dk/services/NetNGlyc/); only N-glycosylation sites with a “potential” score > 0.5 and with a jury agreement were considered
  2. bO-glycosylation sites were predicted using the NetOGlyc 4.0 server (http://www.cbs.dtu.dk/services/NetOGlyc/) [96]; if the G-score was > 0.5, the residue was considered to be O-glycosylated; this table shows the total number of O-glycosylated sites (glycosylated serines and threonines)
  3. cC indicates a complete sequence; P indicates a partial sequence