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Table 1 ABC transporters identified in the B. tabaci Q genome

From: Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci

Subfamily Gene ID Length (aa) Location (strand) Exon Topology (SMART) Matched gene (Accession no.) N-Glca O-Glcb CDS statusc
ABCA Btabq017043.1 1655 Scaffold_3468:1006:32679+ 20 TMD-NBD-TMD-NBD ABCA3 (AIN44094.1) 10 7 C
Btabq003223.3 1387 Scaffold_13:22456:46016- 18 TMD-NBD-TMD-NBD ABCA3 (XP_008199154.1) 7 12 C
Btabq003232.1 1710 Scaffold_13:231650:263916+ 22 TMD-NBD-TMD-NBD ABCA3 (XP_008580143.1) 13 13 C
Btabq009375.1 1607 Scaffold_204:588616:628011+ 24 TMD-NBD-TMD-NBD ABCA3 (XP_004627914.1) 11 11 C
Btabq009376.1 1642 Scaffold_204:635079:664477:- 24 TMD-NBD-TMD-NBD ABCA3 (XP_007499572.1) 6 14 C
Btabq022409.1 1642 Scaffold_499:371203:397123:+ 23 TMD-NBD-TMD-NBD ABCA3 (XP_007499572.2) 6 16 C
Btabq022410.1 1653 Scaffold_499:405484:424414:- 21 TMD-NBD-TMD-NBD ABCA3 (XP_007499572.3) 11 15 C
Btabq008198.1 1730 Scaffold_188:144605:225978+ 25 TMD-NBD-TMD-NBD ABCA5 (XP_015513231.1) 11 25 C
ABCB Btabq001304.1 837 Scaffold_11:1763748:1779600:- 13 TMD-NBD ABCB6 (KDR08849.1) 5 0 C
Btabq028971.1 684 Scaffold_89:122752:135916:+ 13 TMD-NBD ABCB7 (XP003707011.1) 3 12 C
Btabq013065.1 903 Scaffold_266:334207:358911:- 19 TMD-NBD ABCB8 (KDR20884.1) 2 8 C
ABCC Btabq000311.1 1543 Scaffold_102:620714:659592:+ 28 TMD-NBD-TMD-NBD ABCC1 (XP_012252456.1) 8 10 C
Btabq019529.2 1457 Scaffold_400:253922:298887:+ 30 TMD-NBD-TMD-NBD ABCC1 (KYM99989.1) 11 5 C
Btabq026695.3 1422 Scaffold_728:117063:145027:+ 27 TMD-NBD-TMD-NBD ABCC4 (XP_003487856.1) 8 11 C
Btabq008004.1 1302 Scaffold_1847:75114:101542:- 21 TMD-NBD-TMD-NBD ABCC4 (XP_015366071.1) 11 4 C
Btabq004618.1 1527 Scaffold_1440:62283:85796:- 24 TMD-NBD-TMD-NBD ABCC7 (KDR17053.1) 11 3 C
Btabq003933.1 1558 Scaffold_137:590708:610342:+ 25 TMD-NBD-TMD-NBD ABCC9 (XP_012225332.1) 9 3 C
ABCD Btabq026746.1 733 Scaffold_732:28889:99259:+ 4 TMD-NBD ABCD2 (AIN44106.1) 3 5 C
Btabq017051.1 670 Scaffold_347:310155:194947:- 15 TMD-NBD ABCD3 (XP_008186233.1) 4 9 C
ABCE BtabqABCE1 608 Scaffold_2889:666:11372:+ 10 NBD-NBD ABCE1 (XP_014275278.1) 1 5 C
ABCF Btabq009873.1 595 Scaffold_2118:27608:29395:+ 1 NBD-NBD ABCF1 (XP_971562.1) 5 0 C
Btabq014578.1 626 Scaffold_354:220262:229341:+ 10 NBD-NBD ABCF2 (XP_966990.1) 4 2 C
Btabq016264.1 746 Scaffold_3286:21844:40980:- 13 NBD-NBD ABCF3 (KDR22359.1) 3 5 C
ABCG Btabq003568.1 679 Scaffold_133:520218:533101:- 14 NBD-TMD ABCG1 (KDR13078.1) 6 0 C
Btabq006006.1 634 Scaffold_1598:84277:126599:+ 11 NBD-TMD ABCG1 (XP_001943523.1) 1 4 C
Btabq007377.1 594 Scaffold_176:564047:611847:- 11 NBD-TMD ABCG1 (XP_001947776.2) 1 10 C
Btabq020594.1 703 Scaffold_434:86892:119931:- 14 NBD-TMD ABCG1 (XP_001942514.1) 1 6 C
Btabq029952.1 654 Scaffold_973:236:11383:+ 9 NBD-TMD ABCG1 (KDR12258.1) 1 6 C
Btabq009742.1 300 Scaffold_434:92701:149213:- 6 NBD ABCG1 (XP_008476671.1) 1 3 P
Btabq029281.1 676 Scaffold_910:266071:279898:- 12 NBD-TMD ABCG4 (XP_003246360.1) 6 0 C
Btabq007131.3 649 Scaffold_1729:110948:148435:+ 13 NBD-TMD ABCG4 (XP_008472465.1) 2 4 C
Btabq023008.1 590 Scaffold_523:150957:167280:- 11 NBD-TMD ABCG4 (XP_003246361.1) 2 6 C
Btabq009608.1 590 Scaffold_208:388361:402826:- 10 NBD-TMD ABCG4 (XP_003246361.1) 2 6 C
Btabq009611.1 590 Scaffold_208:557522:571601:+ 11 NBD-TMD ABCG4 (XP_003246361.1) 2 6 C
Btabq023919.1 639 Scaffold_563:13213:51650:- 10 NBD-TMD ABCG4 (XP_008470161.1) 3 9 C
Btabq013894.1 590 Scaffold_282:256960:283064:+ 11 NBD-TMD ABCG4 (XP_003246361.1) 2 6 C
Btabq000844.1 655 Scaffold_1057:77963:94241:+ 10 NBD-TMD ABCG4 (XP_015509620.1) 2 0 C
Btabq026080.1 692 Scaffold_683:129726:137969:+ 3 NBD-TMD ABCG4 (KDR08336.1) 6 11 C
Btabq020567.1 692 Scaffold_4326:21216:33527:+ 4 NBD-TMD ABCG4 (KDR08336.1) 6 11 C
Btabq001288.1 612 Scaffold_11:1463363:1478800:- 10 NBD-TMD ABCG5 (KDR20187.1) 2 19 C
Btabq001290.1 952 Scaffold_11:1493109:1530869:+ 15 TMD ABCG8 (XP_001944045.2) 4 19 P
Btabq023890.1 755 Scaffold_561:73328:85538:- 15 NBD-TMD ABCG14 (XP_014258500.1) 3 1 C
Btabq014028.1 607 Scaffold_2842:67736:80804:+ 12 NBD-TMD Scarlet (XP_014276471.1) 3 11 C
Btabq015484.1 645 Scaffold_3117:65588:78996:+ 14 NBD-TMD Scarlet (XP_014279356.1) 5 9 C
Btabq002474.1 667 Scaffold_121:146665:158695:- 11 NBD-TMD Scarlet (NP_001306193.1) 3 6 C
Btabq022510.1 700 Scaffold_50:595327:617912:+ 13 NBD-TMD White (KDR20987.1) 3 8 C
ABCH Btabq015123.1 685 Scaffold_304:505925:535800:- 15 NBD-TMD ABCG23 (XP_001945365.2) 6 2 C
Btabq003158.1 627 Scaffold_129:187020:214919:- 14 NBD-TMD ABCG23 (XP_001945365.2) 4 1 C
Btabq006712.2 687 Scaffold_167:585953:624494:- 16 NBD-TMD ABCG23 (XP_001945365.2) 6 2 C
Btabq018898.1 679 Scaffold_386:127646:145952:- 15 NBD-TMD ABCG23 (XP_001945365.2) 4 6 C
Btabq019352.1 685 Scaffold_398:364203:394966:+ 15 NBD-TMD ABCG23 (XP_015364832.1) 6 2 C
Btabq026264.1 647 Scaffold_7:597935:614293:- 14 NBD-TMD ABCG23 (XP_001942931.1) 5 1 C
Btabq028063.1 749 Scaffold_82:494722:529828:- 16 NBD-TMD ABCG23 (XP_001945213.1) 6 11 C
Btabq009745.1 695 Scaffold_21:1506328:1537013:- 12 NBD-TMD ABCG20 (XP_014289229.1) 5 3 C
BTA027409.1 764 Scaffold_791:944:21302:+ 16 NBD-TMD ABCG20 (XP_001951744.1) 6 8 C
  1. aN-glycosylation sites were predicted using the NetNGlyc 1.0 server (http://www.cbs.dtu.dk/services/NetNGlyc/); only N-glycosylation sites with a “potential” score > 0.5 and with a jury agreement were considered
  2. bO-glycosylation sites were predicted using the NetOGlyc 4.0 server (http://www.cbs.dtu.dk/services/NetOGlyc/) [96]; if the G-score was > 0.5, the residue was considered to be O-glycosylated; this table shows the total number of O-glycosylated sites (glycosylated serines and threonines)
  3. cC indicates a complete sequence; P indicates a partial sequence