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Table 1 Annotation and classification of the small RNAs in the four libraries

From: Small RNA sequencing reveals a role for sugarcane miRNAs and their targets in response to Sporisorium scitamineum infection

Category

RCK

RT

YACK

 

YAT

 

Unique

Total

Unique

Total

Unique

Total

Unique

Total

Total reads

13,382,890

36,396,588

12,844,706

27,812,972

12,996,601

27,464,468

14,288,057

28,290,231

miRNA reads

62,110

3,842,212

56,796

2,769,304

58,020

2,117,246

60,639

1,973,307

rRNA reads

149,095

4,535,331

80,458

1,347,015

97,711

1,924,796

76,758

1,102,526

repeat reads

526

1,214

489

1,114

424

1,067

443

1,153

snRNA reads

6,390

25,149

4,072

11,579

4,800

12,774

4,897

12,309

snoRNA reads

4,381

13,333

2,596

5,793

2,676

6,200

2,545

5,375

srpRNA reads

2

2

0

0

0

0

0

0

tRNA reads

28,141

1,578,262

13,362

475,165

16,925

588,689

12,665

323,280

Unannotaed sRNA reads

13,132,245

26,401,085

12,686,933

23,203,004

12,816,045

22,813,696

14,130,110

24,870,281

  1. RCK and YACK: ROC22 and YA05-179 under sterile water stress after 48 h, respectively; RT and YAT: ROC22 and YA05-179 under Sporisorium scitamineum stress after 48 h, respectively