Table 2 NGS samples used in Vipie validation from Human Microbiome Project, Africa study, and diarrhea sample sourced in Japan gastroenteritis outbreak. ViromeScan listed 20 HMP samples but only Stool types of 4 samples passed QC
From: Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples
AccessionId | Source | Sample Type | Number of Readsa | Sample used in Vipie-ViromeScan-VirusTAP validation | Vipie Resultsb |
|---|---|---|---|---|---|
SRS072276 | HMP | Blood | 438,879 | Yes-No-No | 1,2 |
SRS072318 | HMP | Blood | 753,994 | Yes-No-No | 1,2 |
SRS019033 | HMP | Retroauricular | 1,285,003 | Yes-No-No | 1 |
SRS016944 | HMP | Retroauricular | 1,619,439 | Yes-No-No | 1 |
SRS012902 | HMP | Stool | 2,039,473 | Yes-Yes-No | 1 |
SRS014923 | HMP | Stool | 2,009,179 | Yes-Yes-No | 1 |
SRS014466 | HMP | Vagina | 367,077 | Yes-No-No | 1,2 |
SRS015072 | HMP | Vagina | 495,256 | Yes-No-No | 1,2 |
SRS072313 | HMP | Nasal | 320,672 | Yes-No-No | 2 |
SRS072261 | HMP | Nasal | 367,384 | Yes-No-No | 2 |
SRS072366 | HMP | Nasal | 114,414 | Yes-No-No | 2 |
S11 | Africa | Stool | 1,634,821 | Yes-No-No | 2 |
S12 | Africa | Stool | 1,191,427 | Yes-No-No | 2 |
S14 | Africa | Stool | 1,143,784 | Yes-No-No | 2 |
DRA004165 | Japan | Diarrheal | 1,108,688 | Yes-No-Yes | 2 |