Table 7 Summary of repeat families
Repetitive element | Orenil1.1 | O_niloticus_UMD1 | Δ from Orenil1.1 | ||||||
|---|---|---|---|---|---|---|---|---|---|
Order | Family | Total bp | % | Mean length (bp) | Total bp | % | Mean length (bp) | Total bp | Mean length (bp) |
DNA | TcMar-Tc1 | 39,070,443 | 4.21% | 252.0 | 46,394,192 | 4.60% | 296.3 | 7,323,749 | 44.3 |
hAT | 3,502,443 | 0.38% | 210.2 | 10,103,158 | 1.00% | 277.2 | 6,600,715 | 67.1 | |
hAT-Ac | 11,264,479 | 1.21% | 259.5 | 17,626,929 | 1.75% | 355.9 | 6,362,450 | 96.4 | |
hAT-Charlie | 8,266,601 | 0.89% | 218.1 | 13,709,558 | 1.36% | 370.0 | 5,442,957 | 152.0 | |
LINE | L1 | 4,469,636 | 0.48% | 389.9 | 8,879,041 | 0.88% | 828.9 | 4,409,405 | 439.0 |
L1-1_AFC | 1,277,360 | 0.14% | 671.6 | 3,197,003 | 0.32% | 1,686.2 | 1,919,643 | 1,014.6 | |
L2 | 20,015,588 | 2.16% | 248.8 | 29,334,193 | 2.91% | 381.3 | 9,318,605 | 132.4 | |
Rex-Babar | 9,422,494 | 1.02% | 276.1 | 19,208,630 | 1.90% | 492.6 | 9,786,136 | 216.5 | |
LTR | ERV1 | 1,872,564 | 0.20% | 302.2 | 6,450,995 | 0.64% | 599.8 | 4,578,431 | 297.6 |
Gypsy | 6,734,826 | 0.73% | 415.0 | 13,615,743 | 1.35% | 466.3 | 6,880,917 | 51.3 | |
Pao | 1,745,361 | 0.19% | 686.9 | 4,892,623 | 0.48% | 833.9 | 3,147,262 | 147.0 | |
Unknown | Unknown | 58,952,108 | 6.36% | 215.4 | 97,456,302 | 9.66% | 278.4 | 38,504,194 | 63.0 |
Low complexity | Satellite | 1,110,151 | 0.12% | 268.4 | 7,662,597 | 0.76% | 761.6 | 6,552,446 | 493.2 |
Simple | 11,784,382 | 1.27% | 42.0 | 15,543,664 | 1.54% | 48.2 | 3,759,282 | 6.2 | |
TOTAL | – | 232,691,524 | 25.10% | 183.5 | 379,017,551 | 37.56% | 254.9 | 146,326,027 | 71.4 |