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Table 2 No. of reported alignments falling in some gene regions

From: A simple and economical method for improving whole genome alignment

Alignment method Mouse Dog Cat Cow Rat
LAST with D 1,078,259 72,651 10,854 1,154,227 1,557,117
LAST with 0.9D 1,107,882 73,829 11,017 1,187,743 1,636,078
LAST with 0.85D 1,122,373 74,470 11,101 1,205,915 1,678,187
Our method 1,119,804 74,005 11,024 1,196,821 1,647,855