Skip to main content

Table 3 Comparisons of transcriptome assemblies of Trans-ABySS and ASplice in the naked mole rat H. glaber over different values of k and k-mer coverage cutoff c

From: A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms

H. gla Trans-ABySS ASplice
    R. nor unique mem splicing   R. nor unique mem
k_c trans N50 hits hits (GB) graphs N50 hits hits (GB)
25_50 97640 970 40391 13592 19 110379 533 35671 13056 9
25_100 62495 714 34433 11758 19 71037 445 30442 11558 9
25_200 37371 527 24940 9059 19 42666 359 21515 9371 9
31_50 91149 987 38346 13415 20 116375 457 38271 12900 9
31_100 59730 695 33864 11510 20 73734 381 31369 11356 9
31_200 35292 503 24404 8703 20 42180 320 21110 9084 9
  1. Notations are the same as in Table 2 except that translated BLAST search (to R. norvegicus) is performed instead of nucleotide BLAST search
\