Skip to main content

Table 3 Comparisons of transcriptome assemblies of Trans-ABySS and ASplice in the naked mole rat H. glaber over different values of k and k-mer coverage cutoff c

From: A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms

H. gla

Trans-ABySS

ASplice

   

R. nor

unique

mem

splicing

 

R. nor

unique

mem

k_c

trans

N50

hits

hits

(GB)

graphs

N50

hits

hits

(GB)

25_50

97640

970

40391

13592

19

110379

533

35671

13056

9

25_100

62495

714

34433

11758

19

71037

445

30442

11558

9

25_200

37371

527

24940

9059

19

42666

359

21515

9371

9

31_50

91149

987

38346

13415

20

116375

457

38271

12900

9

31_100

59730

695

33864

11510

20

73734

381

31369

11356

9

31_200

35292

503

24404

8703

20

42180

320

21110

9084

9

  1. Notations are the same as in Table 2 except that translated BLAST search (to R. norvegicus) is performed instead of nucleotide BLAST search