Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

Table 2 Summary of the SNPs with a genotyping rate of homozygous sites less than 50%

Group	Genotype ID	Assembled sequence (bp)	Total SNPs	Heterozygous SNPs	Homozygous SNPs	Total SNPs per kb	Heterozygous SNPs number per Kb	Homozygous SNPs per Kb
Wild	AL_W	7645931	77745	15124	62621	10.17	1.98	8.19
	BD_W	2107974	20324	2441	17883	9.64	1.16	8.48
	BJ_W	6828806	71837	13911	57926	10.52	2.04	8.48
	HZ_W	7063593	72665	12810	59855	10.29	1.81	8.47
	LC_W	6755448	69772	14319	55453	10.33	2.12	8.21
	MT_W	6693879	69792	15421	54371	10.43	2.30	8.12
	SM_W	7406774	72054	18028	54026	9.73	2.43	7.29
	TS_W	7802112	78502	16920	61582	10.06	2.17	7.89
	WF_W	7105355	72840	13639	59201	10.25	1.92	8.33
	Average	6601097	672812	13624	53658	10.16	1.99	8.16
Cultivated	Algeria_C	6734550	69033	17950	51083	10.25	2.67	7.59
	Biano_C	6378374	65886	13780	52106	10.33	2.16	8.17
	BY_C	7509796	76407	15521	60886	10.17	2.07	8.11
	DWX_C	7191808	74136	13487	60649	10.31	1.88	8.43
	MBC_C	7473459	74392	17565	56827	9.95	2.35	7.60
	MM_C	7170711	73359	18597	54762	10.23	2.60	7.64
	RTBS_C	6740816	55532	2993	52539	8.24	0.44	7.79
	SJPP_C	7199676	73112	15336	57776	10.15	2.13	8.02
	YN_C	7668847	75122	13710	61412	9.80	1.79	8.01
	ZZ6H_C	7310710	72836	14474	58362	9.96	1.98	7.98
	Average	7137875	70982	14341	56640	9.94	2.01	7.93
Total	Mean	6883612	69229	14001	55227	10.04	2.00	8.04

ISSN: 1471-2164