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Table 2 Summary of the SNPs with a genotyping rate of homozygous sites less than 50%

From: Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

Group Genotype ID Assembled sequence (bp) Total SNPs Heterozygous SNPs Homozygous SNPs Total SNPs per kb Heterozygous SNPs number per Kb Homozygous SNPs per Kb
Wild AL_W 7645931 77745 15124 62621 10.17 1.98 8.19
BD_W 2107974 20324 2441 17883 9.64 1.16 8.48
BJ_W 6828806 71837 13911 57926 10.52 2.04 8.48
HZ_W 7063593 72665 12810 59855 10.29 1.81 8.47
LC_W 6755448 69772 14319 55453 10.33 2.12 8.21
MT_W 6693879 69792 15421 54371 10.43 2.30 8.12
SM_W 7406774 72054 18028 54026 9.73 2.43 7.29
TS_W 7802112 78502 16920 61582 10.06 2.17 7.89
WF_W 7105355 72840 13639 59201 10.25 1.92 8.33
Average 6601097 672812 13624 53658 10.16 1.99 8.16
Cultivated Algeria_C 6734550 69033 17950 51083 10.25 2.67 7.59
Biano_C 6378374 65886 13780 52106 10.33 2.16 8.17
BY_C 7509796 76407 15521 60886 10.17 2.07 8.11
DWX_C 7191808 74136 13487 60649 10.31 1.88 8.43
MBC_C 7473459 74392 17565 56827 9.95 2.35 7.60
MM_C 7170711 73359 18597 54762 10.23 2.60 7.64
RTBS_C 6740816 55532 2993 52539 8.24 0.44 7.79
SJPP_C 7199676 73112 15336 57776 10.15 2.13 8.02
YN_C 7668847 75122 13710 61412 9.80 1.79 8.01
ZZ6H_C 7310710 72836 14474 58362 9.96 1.98 7.98
  Average 7137875 70982 14341 56640 9.94 2.01 7.93
Total Mean 6883612 69229 14001 55227 10.04 2.00 8.04
  1. See Table 6 for genotypes detail