Table 1 Characteristics of the bovine-associated E. coli strain panel
From: No evidence for a bovine mastitis Escherichia coli pathotype
Strain | Pathotype | Phylogroup (ST, CC) | Serotype | No. of CDS | Contigs | Reference |
|---|---|---|---|---|---|---|
1303 | MAEC | A (10, 10) | O70:H32 | 4734 | finished | This study, [45] |
131/07 | MAEC | A (10, 10) | Ont:H39 | 5123 | 270 | This study, [68] |
2772a | MAEC | B1 (156, 156) | O174:H28 | 4621 | 93 | This study, [68] |
3234/A | MAEC | A (10, 10) | Ont:H39 | 5211 | 290 | This study, [68] |
AA86 | fecal commensal | B2 (91, 1876) | O39:H4 | 4627 | 5 | [46] |
D6-113.11 | MAEC | E (4175, 4175) | O80:H45 | 4750 | 89 | [27] |
D6-117.07 | MAEC | A (10, 10) | O45:H11 | 4477 | 51 | [27] |
D6-117.29 | MAEC | A (10, 10) | O28ac/O42:H37 | 4732 | 980 | Direct submission |
ECA-727 | MAEC | A (10, 10) | O99:H9 | 4779 | 539 | [28] |
ECA-O157 | MAEC | A (398, 398) | O29:H27 | 4434 | 1173 | [28] |
ECC-1470 | MAEC | B1 (847, 847) | Ont:H2 | 4506 | finished | This study, [45] |
ECC-Z | MAEC | A (10, 10) | O74:H39 | 4600 | 24 | [28] |
MPEC4839 | MAEC | A (10, 10) | O105:H32 | 4502 | 124 | This study, [68] |
MPEC4969 | MAEC | B1 (1125, 161) | O139:H19 | 4468 | 130 | This study, [68] |
O157:H43Â T22 | milk commensal | B1 (155, 58) | O157:H43 | 4792 | 64 | [48] |
O32:H37 P4 | MAEC | A (10, 10) | O32:H37 | 4581 | 72 | [25] |
P4-NR | MAEC | B1 (602, 446) | O15:H21/H54 | 4569 | 107 | Direct submission |
RiKo 2299/09 | fecal commensal | B1 (448, 448) | O8/O160:H8 | 4587 | 129 | This study, [68] |
RiKo 2305/09 | fecal commensal | B1 (410, 88) | O8:H21 | 4429 | 123 | This study, [68] |
RiKo 2308/09 | fecal commensal | A (167, 10) | O9a/O89:H9 | 4685 | 186 | This study, [68] |
RiKo 2331/09 | fecal commensal | B1 (1614, NA) | Ont:H23 | 4350 | 59 | This study, [68] |
RiKo 2340/09 | fecal commensal | A (167, 10) | O89:H9 | 4568 | 204 | This study, [68] |
RiKo 2351/09 | fecal commensal | B1 (88, 88) | O21:H4 | 4931 | 252 | This study, [68] |
UVM2 | MAEC | A (1091, 10) | O53:H10 | 4614 | 149 | This study, [68] |
W26 | fecal commensal | B1 (1081, 533) | O45:H14 | 4865 | 165 | [107] |