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Table 2 Summary of gene expression and significant differential expression (DE) in pair-wise comparisons of proliferating cells

From: Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

Comparison Groups Total expressed genes Shared genes Unique Genes in each group FDR < 0.05 |Log2FC|
> 1.0
|Log2FC|
> 2.0
Cold 33R v 38R 15341 14248 817/276 8826 2746 (0.650) 676 (0.782)
  33F v 38F 15457 14220 871/366 8727 3151 (0.693) 1048 (0.768)
Hot 43R v 38R 14896 13869 372/655 1916 1028 (0.459) 264 (0.417)
  43F v 38F 15238 14119 652/467 4596 1386 (0.674) 495 (0.770)
Line        
  33F v 33R 15518 14638 453/427 2092 412 (0.464) 114 (0.403)
  38F v 38R 14973 14137 449/387 2122 263 (0.319) 72 (0.250)
  43F v 43R 15050 13962 809/279 1172 784 (0.764) 320 (0.859)
  1. For each comparison of the treatment groups (Temperature, 33°, 38° or 43 °C/Line, RBC2 or F), the total number of expressed and uniquely expressed genes, number of genes with significant FDR p-value, and the numbers of significant genes also with |Log2 fold change| >1.0 and >2.0 are given. Only those genes with treatment group mean normalized read counts >3.0 are included as expressed. Numbers in parentheses equal the proportion of up-regulated genes
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