Table 1 DE miRNAs revealed by DESeq2 and RT-qPCR analysis in SAV3-i4 infected individuals at week 4 poc
Mature miRNA | SAV expression1 | log2 fold change2 | DESeq2 P-adj.3 | log2 f.c. RT-qPCR4 | RT-qPCR P-adj.5 | Family6 |
|---|---|---|---|---|---|---|
ssa-miR-462a-5p | increase 13x | 3.71 | 1.93x10-5 | 2.58 | 3.0x10-3 | 462 |
ssa-miR-462a-3p | increase 19x | 4.30 | 2.41x10-5 | 3.12 | 3.0x10-3 | 462 |
ssa-miR-462b-5p | increase 3x | 1.75 | 0.07 | − | − | 462 |
ssa-miR-731-5p | increase 12x | 3.58 | 1.79x10-3 | 2.63 | 3.0x10-3 | 731 |
ssa-miR-731-3p | increase 8x | 3.04 | 1.64x10-3 | 2.28 | 3.0x10-3 | 731 |
ssa-miR-146b-5p | increase 14x | 3.82 | 1.17x10-4 | 2.38 | 3.0x10-3 | 146 |
ssa-miR-146a-3p | increase 6x | 2.64 | 0.03 | 2.99 | 3.0x10-3 | 146 |
ssa-miR-146a-3-3p | increase 8x | 3.00 | 0.03 | − | − | 146 |
ssa-miR-21a-1-3p | increase 10x | 3.27 | 4.3x10-3 | 3.31 | 3.0x10-3 | 21 |
ssa-miR-21a-2-3p | increase 8x | 3.16 | 0.02 | 2.21 | 3.0x10-3 | 21 |
ssa-miR-21b-3p | increase 5x | 2.36 | 0.06 | 2.33 | 3.0x10-3 | 21 |
ssa-miR-181c-5p | increase 4x | 2.14 | 0.09 | 1.42 | 0.011 | 181 |
ssa-miR-223-5p | increase 5x | 2.36 | 0.06 | 2.46 | 3.0x10-3 | 223 |
ssa-miR-1338-3p | increase 3x | 1.65 | 0.06 | 1.61 | 3.0x10-3 | 1338 (1388) |
ssa-miR-155-5p | increase 3x | 1.72 | 0.06 | 0.58 | 0.1 | 155 |
ssa-miR-92a-3-5p3 | increase 10x | 3.4 | 0.06 | − | − | 92 |
ssa-miR-7132-3p | increase 3x | 1.79 | 0.06 | 1.88 | 3.0x10-3 | 7132 |
ssa-miR-7132-5p | increase 4x | 2.11 | 0.07 | 1.06 | 0.02 | 7132 |
ssa-miR-734-3p | decrease 4x | -2.09 | 0.07 | -0.19 | 0.96 | 734 |
ssa-miR-2188-3p | decrease 2x | -1.08 | 0.10 | -0.95 | 3.0x10-3 | 2188 |