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Table 6 Number of the inhibitory codon pairs in reporter systems

From: The link between adjacent codon pairs and mRNA stability

Plasmid name Gene name Number of optimal codons Fraction of optimal codons Number of inhibitory pairs Fraction of inhibitory pairs mRNA decay Reference
YEpR5 PGK1 383 0.923 0 0.0E + 00 Slowestb [21]
YEpR6 242 0.583 3 7.2E-03  
YEpR7 242 0.583 3 7.2E-03  
YEpR8 242 0.583 3 7.2E-03  
YEpR9 242 0.583 3 7.2E-03  
YEpR10 236 0.569 3 7.2E-03 Fastestb
pJC672 Synthetic 58 0.983 0 0.0E + 00 Slow [4]
pJC673 0 0.000 3 5.2E-02 Fast
pJC667 LSM8 102 0.936 0 0.0E + 00 Slow [4]
pJC663 48 0.440 0 0.0E + 00 Fast
pJC716 HIS3 208 0.945 0 0.0E + 00 Slowest [4]
pJC712 96 0.436 1 4.6E-03  
pJC711 1 0.005 3 1.4E-02 Fastest
NAa HIS3 216 0.952 0 0.0E + 00 Slowest [9]
NAa 199 0.877 0 0.0E + 00  
NAa 178 0.784 1 4.4E-03  
NAa 156 0.687 1 4.4E-03  
NAa 135 0.595 1 4.4E-03  
NAa 114 0.502 1 4.4E-03  
NAa 93 0.410 1 4.4E-03  
NAa 72 0.317 1 4.4E-03  
NAa 50 0.220 1 4.4E-03  
NAa 29 0.128 1 4.4E-03  
NAa 9 0.040 3 1.3E-02 Fastest
  1. aNA, not applicable
  2. bThe effects on mRNA decay rate have been suggested based on mRNA abundance