Table 6 Number of the inhibitory codon pairs in reporter systems
From: The link between adjacent codon pairs and mRNA stability
Plasmid name | Gene name | Number of optimal codons | Fraction of optimal codons | Number of inhibitory pairs | Fraction of inhibitory pairs | mRNA decay | Reference |
|---|---|---|---|---|---|---|---|
YEpR5 | PGK1 | 383 | 0.923 | 0 | 0.0E + 00 | Slowestb | [21] |
YEpR6 | 242 | 0.583 | 3 | 7.2E-03 | Â | ||
YEpR7 | 242 | 0.583 | 3 | 7.2E-03 | Â | ||
YEpR8 | 242 | 0.583 | 3 | 7.2E-03 | Â | ||
YEpR9 | 242 | 0.583 | 3 | 7.2E-03 | Â | ||
YEpR10 | 236 | 0.569 | 3 | 7.2E-03 | Fastestb | ||
pJC672 | Synthetic | 58 | 0.983 | 0 | 0.0E + 00 | Slow | [4] |
pJC673 | 0 | 0.000 | 3 | 5.2E-02 | Fast | ||
pJC667 | LSM8 | 102 | 0.936 | 0 | 0.0E + 00 | Slow | [4] |
pJC663 | 48 | 0.440 | 0 | 0.0E + 00 | Fast | ||
pJC716 | HIS3 | 208 | 0.945 | 0 | 0.0E + 00 | Slowest | [4] |
pJC712 | 96 | 0.436 | 1 | 4.6E-03 | Â | ||
pJC711 | 1 | 0.005 | 3 | 1.4E-02 | Fastest | ||
NAa | HIS3 | 216 | 0.952 | 0 | 0.0E + 00 | Slowest | [9] |
NAa | 199 | 0.877 | 0 | 0.0E + 00 |  | ||
NAa | 178 | 0.784 | 1 | 4.4E-03 | Â | ||
NAa | 156 | 0.687 | 1 | 4.4E-03 | Â | ||
NAa | 135 | 0.595 | 1 | 4.4E-03 | Â | ||
NAa | 114 | 0.502 | 1 | 4.4E-03 | Â | ||
NAa | 93 | 0.410 | 1 | 4.4E-03 | Â | ||
NAa | 72 | 0.317 | 1 | 4.4E-03 | Â | ||
NAa | 50 | 0.220 | 1 | 4.4E-03 | Â | ||
NAa | 29 | 0.128 | 1 | 4.4E-03 | Â | ||
NAa | 9 | 0.040 | 3 | 1.3E-02 | Fastest |