Table 8 Differentially expressed miRNAs and their target genes between the wild type and the mutant. Fold change = log2(expression value of each gene of the mutant/wild-type)
miRNA | Fold change | Target | Target fold change | Nr annotation |
|---|---|---|---|---|
miR396 | 2.37 | ep123.comp47283_c0_seq1 | −2.11 | ceramidase, putative [Ricinuscommunis] |
ep456.comp55669_c0_seq1 | −2.60 | LOC_Os02g47280.1|Oryza_sativa_subsp._japonica|GRF|LOC_Os02g47280.1 | ||
ep456.comp58258_c0_seq1 | 2.47 | ceramidase, putative [Ricinuscommunis] | ||
ep123.comp17494_c0_seq1 | 4.00 | LOC_Os04g51190.3|Oryza_sativa_subsp._japonica|GRF|LOC_Os04g51190.3 | ||
CL10167 | 4.28 | LOC_Os06g02560.1|Oryza_sativa_subsp._japonica|GRF|LOC_Os06g02560.1 | ||
ep456.comp59964_c0_seq3 | 8.22 | LOC_Os04g51190.2|Oryza_sativa_subsp._japonica|GRF|LOC_Os04g51190.2 | ||
miR319 | 2.04 | CL10849Contig1 | −1.11 | TPA: putative MYB DNA-binding domain superfamily protein [Zea mays] |
ep123.comp27081_c0_seq1 | 1.81 | candidate developmental transcription factor TCP1 [Phalaenopsis hybrid cultivar] | ||
ep123.comp44934_c0_seq2 | 3.19 | TCP family transcription factor [Dendrobium hybrid cultivar] | ||
ep123.comp31487_c0_seq1 | 4.09 | candidate developmental transcription factor TCP1 [Phalaenopsis hybrid cultivar] | ||
miR156 | 2.00 | ep456.comp55441_c0_seq1 | 1.91 | SQUAMOSA promoter-binding-like 3 [Erycinapusilla] |
ep456.comp59687_c2_seq1 | 2.26 | MADS1 protein [Eschscholziacalifornica] | ||
ep456.comp54065_c0_seq1 | 2.36 | SQUAMOSA promoter-binding-like 10 [Erycinapusilla] | ||
ep456.comp52990_c0_seq4 | 2.38 | SQUAMOSA promoter-binding-like 7 [Erycinapusilla] | ||
ep456.comp58153_c0_seq3 | 2.45 | MADS box protein [Phalaenopsisequestris] | ||
ep456.comp52990_c0_seq5 | 3.94 | SQUAMOSA promoter-binding-like 9 [Erycinapusilla] | ||
miR166 | 1.87 | ep123.comp46514_c0_seq3 | −4.20 | PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Vitisvinifera] |
ep456.comp59626_c0_seq4 | 1.84 | hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] | ||
ep456.comp56959_c0_seq2 | 2.55 | Endosomal P24A protein precursor, putative [Ricinuscommunis] | ||
ep456.comp58119_c0_seq1 | 2.56 | class III homeobox-leucine zipper protein [Asparagus officinalis] | ||
ep456.comp59626_c0_seq21 | 7.40 | hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] | ||
miR167 | 1.88 | ep123.comp48918_c0_seq1 | −10.23 | PREDICTED: auxin response factor 2 [Vitisvinifera] |
ep456.comp58489_c0_seq4 | 6.67 | PREDICTED: auxin response factor 2 [Vitisvinifera] | ||
miR535 | 1.45 | ep456.comp49040_c0_seq1 | −5.89 | PREDICTED: ELMO domain-containing protein A-like [Glycine max] |
ep456.comp40482_c0_seq1 | −1.88 | PREDICTED: putative pentatricopeptide repeat-containing protein [Fragariavesca subsp.vesca] | ||
ep456.comp57953_c0_seq2 | 10.40 | S-adenosyl-L-methionine decarboxylase [Dendrobiumcrumenatum] | ||
ep456.comp52990_c0_seq4 | 2.38 | SQUAMOSA promoter-binding-like 7 [Erycinapusilla] | ||
miR398 | −2.67 | ep456.comp58639_c0_seq3 | −7.82 | hypothetical protein PRUPE_ppa020963mg [Prunuspersica] |
ep123.comp48546_c0_seq1 | −3.23 | PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitisvinifera] | ||
ep123.comp47734_c0_seq2 | −2.29 | PREDICTED: uncharacterized protein LOC100245378 [Vitisvinifera] | ||
ep456.comp58639_c0_seq4 | 2.00 | hypothetical protein PRUPE_ppa020963mg [Prunuspersica] | ||
ep456.comp58639_c0_seq1 | 3.41 | PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitisvinifera] | ||
ep123.comp44813_c0_seq1 | 1.14 | hypothetical protein VITISV_023178 [Vitisvinifera] | ||
ep456.comp59280_c0_seq1 | 3.47 | N-acetyltransferase, putative [Ricinuscommunis] | ||
miR528 | 2.19 | ep456.comp57151_c0_seq1 | 1.84 | polyphenol oxidase [Doritispulcherrima x Phalaenopsishybrid cultivar] |
ep456.comp53200_c0_seq2 | 2.87 | TPA: hypothetical protein ZEAMMB73_977642 [Zea mays] | ||
ep456.comp217276_c0_seq1 | 5.34 | glutaredoxin family protein [Musa acuminata] | ||
ep123.comp50029_c0_seq1 | 3.11 | Endoribonuclease Dicer-like protein 4 [Triticumurartu] | ||
miR6173 | −1.11 | ep123.comp48621_c0_seq3 | −8.01 | predicted protein [Hordeumvulgaresubsp. vulgare] |
ep123.comp41527_c0_seq11 | −9.84 | Mitochondrial protein, putative [Medicago truncatula] | ||
ep123.comp48621_c0_seq1 | −8.01 | TPA: hypothetical protein ZEAMMB73_631850 [Zea mays] | ||
miR3630 | 1.96 | ep123.comp42566_c0_seq1 | 10.71 | SQUAMOSA promoter-binding-like 12 [Erycinapusilla] |
miR5083 | 2.35 | ep123.comp25253_c0_seq1 | −3.60 | Os03g0698500 [Oryza sativa Japonica Group] |
CL8873Contig1 | −2.85 | uncharacterized protein LOC100194037 [Zea mays] | ||
ep123.comp25253_c0_seq2 | −3.60 | Os03g0698500 [Oryza sativa Japonica Group] |