Assembly | Trinity | CLC-GWB | Velvet/OASES | SOAPdenovo-Trans | Final assembly |
---|---|---|---|---|---|
# contigs (> = 0 bp) | 431,255 | 508,239 | 798,345 | 289,705 | 906,566 |
# contigs (> = 1000 bp) | 210,220 | 109,992 | 37,698 | 34,781 | 294,867 |
# contigs (> = 2000 bp) | 104,013 | 34,970 | 2,633 | 4,817 | 130,095 |
# contigs (> = 3000 bp) | 46,942 | 13,732 | 441 | 1,099 | 57,437 |
# contigs (> = 4000 bp) | 19,218 | 5,574 | 94 | 282 | 23,416 |
# contigs (> = 5000 bp) | 7,542 | 2,413 | 31 | 104 | 9,227 |
# contigs | 431,255 | 508,239 | 798,345 | 289,705 | 906,566 |
Largest contig | 28,461 | 29,928 | 11,272 | 18,497 | 9,990 |
Total length | 608,060,518 | 419,587,279 | 409,817,309 | 182,675,172 | 966,867,516 |
GC (%) | 43.88 | 43.50 | 42.84 | 43.25 | 43.67 |
N50 | 2,194 | 1,014 | 516 | 674 | 1,671 |
N75 | 1,216 | 542 | 389 | 455 | 745 |
L50 | 89,618 | 107,715 | 266,636 | 82,953 | 168,723 |
L75 | 181,071 | 253,430 | 497,065 | 165,967 | 385,929 |
# N’s per 100 kbp | 0 | 0 | 0 | 0 | 0 |