Table 1 Computational time (in second) for the four models for predicting gene expression measurements
From: Prediction of gene expression with cis-SNPs using mixed models and regularization methods
#SNP | PVE | Lasso | ENET | LMM | BSLMM |
|---|---|---|---|---|---|
510 | 0.118 | 4.117 (0.203) | 2.937 (0.073) | 0.159 (0.148) | 1.780 (1.789) |
1375 | 0.002 | 6.594 (0.273) | 5.345 (0.110) | 0.560 (0.021) | 3.895 (0.917) |
2011 | 0.000 | 5.805 (0.172) | 5.134 (0.100) | 0.727 (0.076) | 1.502 (0.841) |
3045 | 0.357 | 8.623 (0.177) | 7.992 (0.234) | 1.097 (0.011) | 8.286 (8.159) |
4120 | 0.046 | 8.649 (0.282) | 8.385 (0.227) | 1.412 (0.073) | 16.129 (8.792) |
4953 | 0.523 | 10.019 (0.248) | 9.772 (0.285) | 1.621 (0.182) | 7.626 (3.406) |
5818 | 0.124 | 13.492 (0.199) | 13.077 (0.237) | 1.957 (0.057) | 2.269 (0.854) |