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Table 2 Summary statistics of the’Reikou’ linkage map

From: Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa)

HG Number of LGs Total length [cM] Mean length [cM] Number of mapped loci Mean bin span [cM] F. vesca genome coverage [%] a)
Total PHR-SNPs [%] NMH-SNPs [%] Codominant-SSR [%] Dominant-SSR [%]
1 5 394.0 78.8 1,111 815 73.4 235 21.2 49 4.4 12 1.1 0.94 75.2
2 4 423.4 105.9 1,628 1,178 72.4 347 21.3 73 4.5 30 1.8 0.80 75.5
3 4 446.1 111.5 1,824 1,357 74.4 383 21.0 64 3.5 20 1.1 0.77 82.9
4 4 320.0 80.0 996 718 72.1 211 21.2 40 4.0 27 2.7 1.26 64.6
5 4 382.2 95.5 1,793 1,314 73.3 411 22.9 48 2.7 20 1.1 0.56 76.8
6 6 481.0 80.2 2,377 1,801 75.8 474 19.9 69 2.9 33 1.4 0.51 91.6
7 4 369.9 92.5 1,845 1,405 76.2 353 19.1 68 3.7 19 1.0 0.53 95.3
Total 31 2,816.5 92.0 11,574 8,588 74.2 2,414 20.9 411 3.6 161 1.4 0.59 80.4
  1. a) Coverage ratio [%] of F. vesca pseudomolecules (Fvb v2.0.a1) by the ‘Reikou’ linkage map
  2. Number of LGs, total linkage distances, mean linkage distance, numbers of SNP and SSR loci, ratio of PHR- and NMH-SNPs, ratio of codominant- and dominant-SSR loci, mean bin span, coverage for physical distances associated with each LGs on F. vesca (Fvb) v2.0 pseudomolecules are shown
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