Fig. 4

Performance of OrthoFiller on A. thaliana genome with 10% of annotated genes removed. a Using OrthoFiller 89% of found genes overlapped removed gene annotations, compared with 37% without filtration; b Boxplot of protein F-scores for genes predicted using OrthoFiller, versus predictions made in the absence of OrthoFiller filtration, that had a protein F-score of ≤0.95. Scores were typically lower for the de novo runs. c Density plot showing the protein and orthogroup F-scores for all recovered genes using OrthoFiller. d Density plot showing the protein and orthogroup F-scores for all recovered genes in the absence of OrthoFiller filtration