Table 10 SRA RNA-seq data coverage for novel genes in plant genomes
From: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations
Species | SRA ID | Instrument/details | Genes in original annotation | Novel genes | ||||
|---|---|---|---|---|---|---|---|---|
Total | W/ reads | % | Total | W/ reads | % | |||
A. thaliana | SRR3932355 | Illumina HiSeq 2500, paired end. Wild type Columbia rep1 | 27416 | 26110 | 95.2 | 116 | 89 | 76.7 |
B. rapa | SRR2984945 | Illumina HiSeq 2000, paired end. ga-deficient dwarf (gad1-2) + GA rep2 | 40492 | 35793 | 88.4 | 10 | 4 | 40.0 |
C. papaya | SRR3509576 | Illumina HiSeq 2500, paired end. SunUp/Sunset cultivar, young hermaphrodite leaf | 27751 | 24589 | 88.6 | 382 | 327 | 85.6 |
C. rubella | SRR797557 | Illumina Genome Analyzer IIx, paired end | 26521 | 21239 | 80.1 | 228 | 137 | 60.1 |
T. cacao | SRR3217315 | Illumina HiSeq 2000, paired end. Flower/leaf sample | 29452 | 25758 | 87.5 | 94 | 69 | 73.4 |