Table 4 Recovery of removed genes in A. thaliana

No. genes removed

Total genes found^a

1233

(37.5)

13184

(426.7)

11480

(96.2)

42504

(223.5)

Found genes which overlap removed genes^a

1107

(37.5)

4918

(130.4)

11344

(89.0)

35609

(149.5)

Total recovered genes^a

1036

(31.72)

2269

(16.4)

10380

(59.7)

20431

(33.0)

Number of split genes^a

67

(5.4)

1214

(23.6)

945

(34.4)

7451

(37.7)

Mean pF-score of found genes^a

0.75

(0.01)

0.45

(<0.01)

0.70

(<0.01)

0.55

(<0.01)

Mean oF-score of found genes^a

0.94

(<0.01)

0.51

(<0.01)

0.89

(<0.01)

0.64

(<0.01)

High-quality found genes (pF-score ≥0.95)^a

432.0

(29.3)

640.8

(27.4)

3419.8

(21.3)

9079.6

(99.5)

Lower-quality found genes (pF-score <0.95)^a

674.6

(32.1)

4277.2

(147.8)

7923.8

(99.5)

26529.8

(201.3)

Mean pF-score of lower-quality genes^a

0.61

(0.02)

0.31

(<0.01)

0.57

(<0.01)

0.33

(<0.01)

% of lower-quality genes with oF-score < 0.95^a

34.6

(1.9)

81.1

(0.9)

43.4

(0.6)

73.9

(0.1)