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Table 1 The qRT-PCR-validated DEGs in the transcriptome data

From: Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival

Locus / gene in V. parahemolyticus CHN25

Description of encoded protein

Fold change

RNA-Seq

RT-PCR

ΔVpacspA mutant

VpaChn25A_0188

Hypothetical protein

13.41

10.21

VpaChn25_1642

Tricarboxylic transport TctC

10.04

10.35

VpaChn25_1640

GntR family transcriptional regulator

4.24

2.49

VpaChn25A_0561

Aldehyde dehydrogenase

7.05

5.24

VpaChn25_0068

Hyperosmotically inducible periplasmic protein

3.03

2.33

VpaChn25A_1398

L-threonine 3-dehydrogenase

0.07

0.03

VpaChn25A_1399

2-amino-3-ketobutyrate CoA ligase

0.07

0.03

VpaChn25_2988

Amino acid ABC transporter substrate-binding protein

0.14

0.09

VpaChn25A_0149

Transcriptional regulator CpxR

0.22

0.12

VpaChn25A_0568

Transcriptional regulator BetI

0.48

0.32

ΔVpacspD mutant

VpaChn25_1716

Glycine betaine transporter periplasmic subunit

16.04

19.13

VpaChn25A_0188

Hypothetical protein

12.6

11.11

VpaChn25_1642

Tricarboxylic transport TctC

7.95

7.13

VpaChn25A_0561

Aldehyde dehydrogenase

4.08

3.23

VpaChn25_1640

GntR family transcriptional regulator

2.29

2.62

VpaChn25_2248

Glycerol uptake facilitator protein GlpF

0.04

0.02

VpaChn25A_1398

L-threonine 3-dehydrogenase

0.05

0.03

VpaChn25A_1399

2-amino-3-ketobutyrate CoA ligase

0.048

0.021

VpaChn25_2988

Amino acid ABC transporter substrate-binding protein

0.2

0.14

VpaChn25A_0149

Transcriptional regulator CpxR

0.3

0.25

ΔVpacspAD mutant

VpaChn25A_1312

PTS system fructose-specific transporter subunit IIABC

8.77

21.54

VpaChn25A_0303

PTS system fructose-specific transporter subunit IIA

8.07

19.04

VpaChn25A_1313

Mannose-6-phosphate isomerase

5.17

16.82

VpaChn25_0669

Trehalose-6-phosphate hydrolase

4.51

9.77

VpaChn25A_0561

Aldehyde dehydrogenase

2.97

4.1

VpaChn25_2248

Glycerol uptake facilitator protein GlpF

0.033

0.039

VpaChn25_2249

Glycerol kinase

0.04

0.07

VpaChn25_0112

Phosphoenolpyruvate carboxykinase

0.17

0.22

VpaChn25_2988

Amino acid ABC transporter substrate-binding protein

0.31

0.43

VpaChn25A_0149

Transcriptional regulator CpxR

0.42

0.46