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Table 3 Summary of Pieris rapae transcriptome annotation

From: Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study

Unigene annotation

Bombyx mori proteins (E < 10-5)

11,049 (62.8%)

Drosophila melanogaster proteins (E < 10-5)

9041 (51.3%)

NCBI nr database (E < 10-5)

12,358 (70.2%)

UniProt/Swiss-Prot database (E < 10-5)

8651 (49.2%)

UniProt/TrEMBL database (E < 10-5)

12,230 (69.5%)

InterProScan

11,537 (65.6%)

Pfam domaina

11,428 (65.0%)

GO annotationb

7464 (42.4%)

KEGG annotationa

4554 (25.9%)

  1. aPfam and KEGG searches included only sequences from 13979 protein coding ORFs
  2. bGO matches were identified for 9595 unigenes, of which 7464 met significance cutoff requirements for annotation