Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study

BMC Genomics

Table 4 Summary of biallelic SNPs identified in the final transcriptome assembly

SNP summary	Total	Filtered^a
Number of biallelic SNPs	524184	63595
SNPs/bp (all unigenes)		0.0025
Number of unigenes containing variants		5105
SNPs/bp in variant unigenes		0.0055
% transitions^b		60.55%
% in predicted coding transcripts		98.59%
% in exons		71.51%
% nonsynonymous substitutions		12.50%
% synonymous substitutions		59.01%

^aSNPs passing filtering criteria have a called genotype (Q > 20) in at least 16 individuals per population with a minor allele frequency >1%
^bExpect 33% if transitions occur at random

ISSN: 1471-2164